Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30427.Seq
         (874 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    48   8e-06
At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,...    46   4e-05
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    44   1e-04
At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol 3-phosphat...    36   0.035
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    35   0.082
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   2.3  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    30   2.3  
At1g35260.1 68414.m04372 Bet v I allergen family protein similar...    29   5.4  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   9.4  

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = -2

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRYFDVTHATAQ-LAPTFISKV 331
           +DL+   L  +++ RD+ALV     +R ++L    +T S +F++  ++ Q + P FISKV
Sbjct: 221 KDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTWSDFFNLDGSSPQKVEPLFISKV 280

Query: 330 NTAVQLLLVGTTLASPVFGYVD 265
           NT  QL LV   +  P FG  D
Sbjct: 281 NTVFQLTLVAGAILQPEFGNPD 302



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 37/57 (64%)
 Frame = -3

Query: 677 SQNNYNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLI 507
           S   Y+ A   L  +G +D LDG++AR  K  S  +GS+LDP+ADKVL+  + ++++
Sbjct: 164 SNEMYSSAFLGLAVSGASDWLDGYVARRMKINSV-VGSYLDPLADKVLIGCVAVAMV 219


>At3g55030.1 68416.m06111 phosphatidylglycerolphosphate synthase,
           putative similar to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana];
           contains non-consensus CG acceptor splice site at exon 4
          Length = 233

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -3

Query: 647 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           + + A ITD LDG+IAR  +   ++ G+FLDP+ADK++VA   I L
Sbjct: 76  IFIAAAITDWLDGYIARKMR-LGSEFGAFLDPVADKLMVAATLILL 120


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = -3

Query: 647 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           + + A ITD LDG++AR  +  S   G+FLDP+ADK++VA   I L
Sbjct: 140 IFIAAAITDWLDGYLARKMRLGSA-FGAFLDPVADKLMVAATLILL 184


>At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase / phosphatidylinositol
           synthase (PIS1) identical to phosphatidylinositol
           synthase (PIS1) GB:AJ000539 [gi:3367632]
          Length = 227

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 647 LLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFI--SLIGRTSYLF 486
           L  F+   D +DGW+AR +   ST  G+ LD + D+V  A L +  S I R S +F
Sbjct: 47  LYFFSFCCDAVDGWVARRFNQVST-FGAVLDMVTDRVSTACLLVILSQIYRPSLVF 101


>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase, putative /
           phosphatidylinositol synthase, putative similar to
           phosphatidylinositol synthase (PIS1) - Arabidopsis
           thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 671 NNYNLALGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFI--SLIGRT 498
           +N  L   L  F+   D +DGW AR +   ST  G+ LD + D+V  A L +  S I R 
Sbjct: 36  SNKTLFSLLYFFSFCCDAVDGWCARKFNQVST-FGAVLDMVTDRVSTACLLVILSQIYRP 94

Query: 497 SYLF 486
           S +F
Sbjct: 95  SLVF 98


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 23  LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 166
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 346 SRCKLCGCVCYIEIPTQRSRWW*AYISNDKSSHN 447
           S C +CG   +    T R+ WW A ++  +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247


>At1g35260.1 68414.m04372 Bet v I allergen family protein similar to
           Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
           124, 136-139 (1999)] contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 152

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = -2

Query: 783 KDLRKVVGKEMSSLSPNILRYPLE*QCRPYLGYVIIPE*LQPGTGAISIRWNYRFAR 613
           KD+ +V+ +E + +   +L  PL+ + + +L  + +      G G++ ++WN ++ R
Sbjct: 67  KDMIEVIDEEKNVIQLRVLEGPLKKEYKSFLKTMKVMSPKHGGPGSV-VKWNMKYER 122


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 414 LPPPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 307
           L PP++LSR+ D+     Q+ P F   ++  V+ L+
Sbjct: 632 LYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,165,549
Number of Sequences: 28952
Number of extensions: 344617
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)