Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30426.Seq
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   6.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 435 WQDHATAADVEKILSSVGIXTDAEKLKKVITEL 337
           WQ+   AAD++  LSS+    ++   ++V+ EL
Sbjct: 273 WQNSLRAADIQPTLSSIR-HPESNPSERVMREL 304


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = -1

Query: 541  WRFVQDERYSFALHVSCQLGLKKCVTWPRIYWLC 440
            + F  DER    +     + L  C+ +    W+C
Sbjct: 1142 YEFASDERIKLVIKAIIIMILSGCIIFTEGIWIC 1175


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 429 DHATAADVEKILSSVGIXTDAEKLKKVITE 340
           D  T   ++ +L       +AEKLKK ITE
Sbjct: 35  DQMTRNYLDCVLDKGKCTKEAEKLKKGITE 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,590
Number of Sequences: 336
Number of extensions: 2126
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)