Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30426.Seq
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    75   1e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    69   5e-13
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    68   1e-12
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   6.5  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.6  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 31/61 (50%), Positives = 49/61 (80%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAP 259
           G +D  +A+D+E +LS+VGI  ++E+++ +I ELNGKD+++LIAAG EKL+++P GG A 
Sbjct: 13  GGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAAS 72

Query: 258 A 256
           A
Sbjct: 73  A 73



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 473 MRYVAAYLLAVLGGK 429
           M+Y+AAYLL  +GGK
Sbjct: 1   MKYLAAYLLLTVGGK 15


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 29/61 (47%), Positives = 50/61 (81%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAP 259
           G ++  +A+D+E +LS+VGI +++E+++ +I EL+GKD+++LIAAG EKL+++P GG A 
Sbjct: 13  GGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGAAA 72

Query: 258 A 256
           A
Sbjct: 73  A 73



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 473 MRYVAAYLLAVLGGK 429
           M+Y+AAYLL  +GGK
Sbjct: 1   MKYLAAYLLLTVGGK 15


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/57 (50%), Positives = 46/57 (80%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 268
           G +   +A+D+E +LS+VGI  +AE+++ +I+ELNGK++E+LIAAG EKLS++P  G
Sbjct: 13  GGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 473 MRYVAAYLLAVLGGK 429
           M+Y+AAYLL  +GGK
Sbjct: 1   MKYLAAYLLLTVGGK 15


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 478 KKCVTWPRIYWLCWV 434
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 141 TKLYKSTRRWSLFQFMF 91
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,997
Number of Sequences: 5004
Number of extensions: 34953
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)