Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30426.Seq
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     62   6e-10
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           58   7e-09
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    56   2e-08
07_01_1001 - 8460467-8460799                                           42   5e-04
07_03_0321 + 16757414-16757743                                         41   9e-04
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   6.8  
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    28   9.0  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 27/58 (46%), Positives = 42/58 (72%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           G     +A D++ IL SVG+  + E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 13  GGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAPA 256
           TA D+  IL SVG   D  K++ ++++++GKD+ +LIA GREK +S+P GGG  A
Sbjct: 19  TAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSGGGGVA 73


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 39/55 (70%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAPA 256
           +A D+  IL SVG   D  K++ ++++L GKD+ ++IA+GREK +S+P GGG  A
Sbjct: 212 SAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGGGVA 266


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAPA 256
           T  DV  IL +VG   D +KL  +  ++ GKD+ +++AAG E L+   V G APA
Sbjct: 19  TKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGV-GAAPA 72


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLS--SMPVGGGAPAG 253
           T  DV  IL +VG   D +KL  +  ++ GKD+ +++AAG E L+  + P    A AG
Sbjct: 19  TKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLAFGAAPAAAAATAG 76


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 519 VILSHYTFRVN*DLKNALRGRVFTGCAGWQD 427
           ++++HY ++V    K+   GRV T  A WQD
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQD 531


>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 393 SSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPV 274
           + VG   D+EKL+    ELN + +E L+A    K+  +PV
Sbjct: 426 TGVGNIDDSEKLRP--EELNQQTIEALVAENNLKMEILPV 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,556
Number of Sequences: 37544
Number of extensions: 244005
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)