Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30426.Seq
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   2e-11
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27971| Best HMM Match : MgtE_N (HMM E-Value=2.8)                    29   5.2  
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_42907| Best HMM Match : TFIIS_C (HMM E-Value=0.98)                  28   9.1  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/62 (48%), Positives = 45/62 (72%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAP 259
           G   + +A D++ IL SVGI +D E+L KVI+EL+GK V+++I AG+ KL+++P GG   
Sbjct: 662 GNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATVPTGGAVA 721

Query: 258 AG 253
           AG
Sbjct: 722 AG 723


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 538  RFVQDERYSFALHVSCQLGLKKCVTW 461
            RF++DER S A+ VS + GL     W
Sbjct: 2683 RFIEDERLSLAMEVSTKCGLDPSGVW 2708


>SB_27971| Best HMM Match : MgtE_N (HMM E-Value=2.8)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -2

Query: 417 AADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAPA 256
           AADV+K+++S G   D +KL   I      DV++LIA+G+       +  G  A
Sbjct: 45  AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGKAADGDKLIASGKAA 94



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = -2

Query: 417 AADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGR 298
           AADV+K+++S G   D +KL   I      DV++LIA+G+
Sbjct: 9   AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGK 44



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = -2

Query: 417 AADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGR 298
           AADV+K+++S G   D +KL   I      DV++LIA+G+
Sbjct: 21  AADVDKLIAS-GKAADVDKL---IASGKAADVDKLIASGK 56


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 692 PXSTWGDSQNMLRXSRFLSHHPXGSRLP*NSPFLD 588
           P S+  DS+N LR SRF    P G +LP  S   D
Sbjct: 161 PISSSSDSENSLRLSRFCCFSPSG-KLPLQSTSTD 194


>SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 314 SCSTSLPLSSVIT-FLSFSASVXIPTELRIFSTSAAVAWSCHPAQPVN 454
           +CS S+  SS  T  +  +A+   P E RI  +S  ++ S HP  PV+
Sbjct: 304 ACSPSMSESSASTNSVCHTATAAKPNEARIPCSSPDISASRHPLSPVS 351


>SB_42907| Best HMM Match : TFIIS_C (HMM E-Value=0.98)
          Length = 519

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 383 PTELRIFSTSAAVAWSCHPAQPVNTRPRNAFFKS*LTRNV 502
           PT   I +  A + WS H    +N R RNA F++ L + V
Sbjct: 168 PTARPICTCGAHITWSRHRHCMLNDRERNAAFQAALQKMV 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,099,010
Number of Sequences: 59808
Number of extensions: 279193
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)