Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30426.Seq
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       62   5e-10
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       62   5e-10
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       62   5e-10
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       60   2e-09
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    58   8e-09
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    58   8e-09
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    53   2e-07
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    52   4e-07
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    33   0.26 
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    30   1.9  
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ...    30   1.9  
At3g10720.2 68416.m01291 pectinesterase, putative contains simil...    30   1.9  
At3g51780.1 68416.m05678 BAG domain-containing protein low simil...    29   3.2  
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi...    28   5.7  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/52 (51%), Positives = 41/52 (78%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           T+AD++ IL SVG  T+  +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 19  TSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/52 (51%), Positives = 41/52 (78%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           T+AD++ IL SVG  T+  +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 19  TSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/52 (51%), Positives = 41/52 (78%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           T+AD++ IL SVG  T+  +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 19  TSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/52 (50%), Positives = 39/52 (75%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           T  D++ IL SVG  T+  +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 19  TTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 24/58 (41%), Positives = 42/58 (72%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           G   + +A +++ I+ +VG   D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 13  GGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 24/58 (41%), Positives = 42/58 (72%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 265
           G   + +A +++ I+ +VG   D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 13  GGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/58 (41%), Positives = 39/58 (67%)
 Frame = -2

Query: 429 DHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAPA 256
           ++ + AD++KI+ SVG   D EK+    + +  +DV +LIA GREK++++  GGGA A
Sbjct: 16  ENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALSSGGGAVA 73


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/61 (42%), Positives = 39/61 (63%)
 Frame = -2

Query: 438 GWQDHATAADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGAP 259
           G  ++ T+ D++KIL SVG   D  K+  + + +   DV +LIAAGREK+S++  GG A 
Sbjct: 13  GGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSGGPAV 72

Query: 258 A 256
           A
Sbjct: 73  A 73


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = -2

Query: 420 TAADVEKILSSVGIXTDAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 277
           T+   E++L   G+ T    +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 320 TSGGAEELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 256 CRCSASYWH*RQLLTSGRNKLFNILAVELSDYFLKLLSVSXDTDGAEDLLNVSGSXVVLP 435
           C+   S  H +++  S   +L N++A+++    +K L  S        +LNVSG+ +V  
Sbjct: 79  CKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSL 138

Query: 436 PST 444
           P T
Sbjct: 139 PQT 141


>At4g26380.1 68417.m03795 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 1016

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 589  MVYDFCSIKPXTIRQQWRFVQ-DERYSFALHVSCQLGLKKCVTWPRIYWLCW 437
            M Y +C +    +  + RF + DE  S  LH+ C LG+   +  P   W+C+
Sbjct: 932  MTY-WCEVCERNLNPKERFYKCDEYCSITLHIECMLGVALYIR-PGSSWICF 981


>At3g10720.2 68416.m01291 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 619

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 440 AQPVNTRPRNAFFKS*LTRNV*CERITFVLNKPPLLAYGXWFNRTKIINHLKMVN 604
           A P NTRP + +F       V  E I   +NK  L+  G   N+T I  +  +V+
Sbjct: 322 AAPNNTRPEDGYFVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIITGNHNVVD 376


>At3g51780.1 68416.m05678 BAG domain-containing protein low
           similarity to SP|Q99933 BAG-family molecular chaperone
           regulator-1 {Homo sapiens}; contains Pfam profile
           PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain
          Length = 269

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 426 HATAADVEKIL-SSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLSSMPV 274
           HAT  DV+K L    G+  +A +LK +   +   D EQL AAG +  S + V
Sbjct: 66  HATFGDVKKALVQKTGL--EASELKILFRGVERDDAEQLQAAGVKDASKLVV 115


>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 510

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 417 AADVEKILSSVGIXTDAEKLKKVITELNGKDVEQLIAAGREKLS 286
           A+ VE  +S+     DAE++ K++T+     VE L+     KLS
Sbjct: 50  ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,813
Number of Sequences: 28952
Number of extensions: 188262
Number of successful extensions: 450
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)