Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30421.Seq
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   6.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 750 LKPVLVLYLHLMAFIRPYWRKTPRGSDVR 664
           +KP  VL  H   FI   W+ + R +D++
Sbjct: 255 IKPKCVLSDHGTQFISNTWQNSLRAADIQ 283


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 606 HTASSAGPDNMLTSSPFAQTAHHFPWASFSNMG 704
           H++SSA         P+   AHH   A+ +  G
Sbjct: 47  HSSSSASTSPAARMYPYVSAAHHHHQAAAAAFG 79


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 606 HTASSAGPDNMLTSSPFAQTAHHFPWASFSNMG 704
           H++SSA         P+   AHH   A+ +  G
Sbjct: 47  HSSSSASTSPAARMYPYVSAAHHHHQAAAAAFG 79


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 389 PSPPADTFLPAL 354
           PSPPA + LPAL
Sbjct: 72  PSPPAPSELPAL 83


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 526 PSLRRRGVASGARSLQPSRPPRRASGDT 609
           P+++   +  G RS +  RP    +GDT
Sbjct: 64  PAVQGSSLTEGKRSKRSKRPNGDTNGDT 91


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 335 FLVLHW*EPAGMYRPVGWVLSWATHALR 418
           +L L   E + +++P GWVL+ A  A R
Sbjct: 314 YLNLFLEELSEIFKPRGWVLTIAVPASR 341


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 405 HTHCATCDNGRPQG 446
           H+ CAT  NG P G
Sbjct: 35  HSPCATGSNGLPAG 48


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 170 FNLSAIITSRAVPRKKSPGGKTAVVLSD 253
           F++S+I+   A+   KSP       LSD
Sbjct: 23  FSISSILPETALEAPKSPENHPETELSD 50


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 35  FNDHNIVITEL 67
           F DHNI ITE+
Sbjct: 93  FQDHNIEITEV 103


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 35  FNDHNIVITEL 67
           F DHNI ITE+
Sbjct: 326 FQDHNIEITEV 336


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 35  FNDHNIVITEL 67
           F DHNI ITE+
Sbjct: 326 FQDHNIEITEV 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,231
Number of Sequences: 336
Number of extensions: 4599
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)