Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30421.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)                    46   5e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)                   46   5e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   5e-05
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
          Length = 85

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -1

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
          Length = 137

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -1

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -1

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
 Frame = +1

Query: 403  HTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICTELSS---------APSLRRRGVAS 555
            H  +  P  +A P  ++S+  G ++G  + +    T   S          PS R   +  
Sbjct: 1637 HPSMLMPHPLAMPGLMMSMSSGMISGSNTSTTTTATSSRSRDPDSSPYRTPSDRSSPLTV 1696

Query: 556  GARSLQPSRPPRRASGDTRPPARA 627
            G RS +P  PPR      R P R+
Sbjct: 1697 GGRSSRPRSPPRLMEPRPRSPVRS 1720


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/82 (24%), Positives = 32/82 (39%)
 Frame = +1

Query: 472 MTGIPSKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPARALTIC*RRV 651
           + GIP+ +     + + AP +   G+   A+ + P  PP       R  A   T+  +  
Sbjct: 227 LAGIPTHNTPTFKQAAKAPLINTLGINPQAKGIIPGHPPNMGPASGR-TAGMTTVAPKAQ 285

Query: 652 LSLKPHITSPGRLSPIWANKGH 717
           +   P   SPG      A K H
Sbjct: 286 VDNHPANISPGLAGQCKAGKMH 307


>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
           +++ + L G  + RP   + + LGAA +AG A  VW
Sbjct: 21  MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 363 QECIGRW--AGYCRGPHTHCATC 425
           QEC+GRW  A + RG H  C  C
Sbjct: 26  QECLGRWNVAQFFRGRHPTCPHC 48


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 508  TELSSAPSLRRRGVASGARSLQPSRPP 588
            T L++ PS R+ G +S A++ +PS PP
Sbjct: 3156 TVLTTLPSSRQAGTSSTAKATRPSVPP 3182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,428,182
Number of Sequences: 59808
Number of extensions: 596733
Number of successful extensions: 1494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)