Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30421.Seq
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor...    31   1.3  
AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing...    31   1.3  
AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing...    31   1.3  
U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   9.0  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   9.0  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   9.0  

>U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor
           U2AF65 protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -1

Query: 695 GERRPGEVMCGLSERTRRQHIVRARAGGRVSPDARRGGRDGCRLRAPEATPRRRRD 528
           GERR G    G  +R R +   R R GG      RRGG D  R R  E  P++ R+
Sbjct: 81  GERRGGG---GGGDRDRSRSRERRRGGGGRDEPRRRGGDDEARSRR-EPEPQKPRE 132


>AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform a protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -1

Query: 695 GERRPGEVMCGLSERTRRQHIVRARAGGRVSPDARRGGRDGCRLRAPEATPRRRRD 528
           GERR G    G  +R R +   R R GG      RRGG D  R R  E  P++ R+
Sbjct: 81  GERRGGG---GGGDRDRSRSRERRRGGGGRDEPRRRGGDDEARSRR-EPEPQKPRE 132


>AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform c protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -1

Query: 695 GERRPGEVMCGLSERTRRQHIVRARAGGRVSPDARRGGRDGCRLRAPEATPRRRRD 528
           GERR G    G  +R R +   R R GG      RRGG D  R R  E  P++ R+
Sbjct: 59  GERRGGG---GGGDRDRSRSRERRRGGGGRDEPRRRGGDDEARSRR-EPEPQKPRE 110


>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = -1

Query: 665 GLSERTRRQHIVRARAGGRVSPDARRGGRDGCRLRAPEATPRRRRDGAELSSV---QMQA 495
           GL++ T+R+HI  A         A         L         + DG  +++    ++QA
Sbjct: 369 GLTQVTQREHICLAALRAVAFQSAEMIAAVEQDLEGGTKVTTLKVDGGMIANKLFNEIQA 428

Query: 494 DLLGIPVIRPLMMESTALGAAIVAG 420
           D++G  ++ P + E +  GAA+  G
Sbjct: 429 DIMGRDIVTPKITEISGWGAAVAGG 453


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -1

Query: 617 GGRVSPDARRGGRDGCRLRAP--EATPRR---RRD 528
           GG  SP ARRGG  G R R+P    +PRR   RRD
Sbjct: 196 GGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRD 230



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 535 RRRGVASGARSLQPSRPPRRASGDTRPPA 621
           RRR  +S +RS  P  PPRR   D+   A
Sbjct: 502 RRRSPSSSSRSRSPPPPPRRPRQDSEQQA 530


>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
           protein C05D12.3c protein.
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -2

Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
           +GG   NS  C+C       +  +    K Q WG P     +CVC P  Y  +  I  CR
Sbjct: 25  NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79


>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
           protein C05D12.3a protein.
          Length = 1039

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -2

Query: 538 DGGMAQNSVLCRCRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCR 359
           +GG   NS  C+C       +  +    K Q WG P     +CVC P  Y  +  I  CR
Sbjct: 25  NGGTPINSTACQCPAFVAGERCEIV---KCQRWGIPDKD--RCVCAPGWYDKYCGIRGCR 79


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
           protein F20B10.1 protein.
          Length = 1180

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 542 EELPQGRAVCSHRVRH----GARLVTHGLQRGP*QYADVESFRSNRTSLPLGVFLQYGRI 709
           + L +G   CS  +R+    GARL+T G +R P   +   S RS++  L  G    Y R+
Sbjct: 574 DRLVEGFEACSQFMRYTCRGGARLMTQGDERSP---SSWYSTRSDKHGLQWGEAPPYSRM 630

Query: 710 KAIKCRYKTNTGFNLHXRL-SCKGSE 784
               C    N G  LH R+ +C   E
Sbjct: 631 ----CSCAIN-GSCLHNRMCNCDSGE 651


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 487 SKSACICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRPPAR 624
           S S+   +  S + S   R  +S +     SR PRR   DTRPPAR
Sbjct: 17  SSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRR--DTRPPAR 60


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -1

Query: 656 ERTRRQHIVRARAGGRVSPDARRGGRDGC----RLRAPEATPRRRRDGAELSSVQMQADL 489
           ER R +   R+R+      D  R  R       R R+     RRRR+ +  S V      
Sbjct: 88  ERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNSPQR 147

Query: 488 LGIPVIRPLMMESTALGAAIVAG 420
           +  PVI PL+ E   L AA+ +G
Sbjct: 148 VKEPVINPLIRED--LAAAVESG 168


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -1

Query: 656 ERTRRQHIVRARAGGRVSPDARRGGRDGC----RLRAPEATPRRRRDGAELSSVQMQADL 489
           ER R +   R+R+      D  R  R       R R+     RRRR+ +  S V      
Sbjct: 88  ERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNSPQR 147

Query: 488 LGIPVIRPLMMESTALGAAIVAG 420
           +  PVI PL+ E   L AA+ +G
Sbjct: 148 VKEPVINPLIRED--LAAAVESG 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,525,335
Number of Sequences: 27780
Number of extensions: 430702
Number of successful extensions: 1061
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)