Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30420.Seq
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    27   2.1  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    26   3.6  
02_02_0109 + 6830802-6833412,6833491-6833861                           26   4.8  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 39  LISVHTNIL*CWSIIINRTXKHFHQIAXERV 131
           L+ V+ +    + I+IN T KH+H+ + +R+
Sbjct: 727 LLGVYASETQFFKIMINMTLKHYHEFSRKRI 757


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 162 VEYYGWKTTYTLF 124
           VEYYGWK   T+F
Sbjct: 157 VEYYGWKQVTTIF 169


>02_02_0109 + 6830802-6833412,6833491-6833861
          Length = 993

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 136 SSFPTIIFNCNKTKLIXL 189
           +SFPT+++NC+  K + L
Sbjct: 110 TSFPTMLYNCSNLKFLDL 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,825,607
Number of Sequences: 37544
Number of extensions: 41568
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)