Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30420.Seq
         (257 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            21   9.8  
AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse t...    21   9.8  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 143 KLLTHSFXSYLMKVLXSSINYYTPTLQN 60
           K L H+F +  +    SSI+ +T  ++N
Sbjct: 837 KFLIHTFGNGFLMCSASSIDVWTMGIKN 864


>AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 172 FYCS*ILWLENYL 134
           F CS + WL++YL
Sbjct: 93  FPCSLVQWLKSYL 105


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,018
Number of Sequences: 2352
Number of extensions: 1934
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 14058336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)