Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30420.Seq
         (257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    27   1.4  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    25   7.4  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    25   9.8  

>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 193 LLXLLIWFYCS*ILW 149
           LL  +IWFYCS I W
Sbjct: 207 LLTSMIWFYCSHIAW 221


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 133 VSSFPTIIFNCNKTKLIXLR 192
           +  FP +I+ C KT+ + +R
Sbjct: 307 IGRFPAVIWRCRKTRAVLMR 326


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 133 VSSFPTIIFNCNKTKLIXLR 192
           +  FP +I+ C KT+ + +R
Sbjct: 303 IGRFPAVIWRCRKTRAVLMR 322


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 84  LLYSNITKCLYVH*LNY 34
           +++S IT CLYVH L Y
Sbjct: 224 IVFSLITTCLYVHHLYY 240


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 133 VSSFPTIIFNCNKTKLIXLR 192
           +  FP +I+ C KT+ + +R
Sbjct: 307 IGRFPAVIWRCRKTRAVLMR 326


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 128 SFXSYLMKVLXSSINYYTPTLQNVCMY 48
           SF   L K L +++NY     QNVC +
Sbjct: 835 SFSDVLQKRLFNAMNYVFVNSQNVCYH 861


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,781,502
Number of Sequences: 27780
Number of extensions: 47386
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)