Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30419.Seq
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    30   0.39 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.7  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   2.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   4.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   4.8  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   6.3  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   6.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   8.3  

>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 394 SEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSKGAI 540
           SE+ ST   A+TT++ R ++    A     ++        P +SSKG I
Sbjct: 127 SESKSTSQSAVTTNSTRRKEKELEASKDGKIKPSSSNTRYPAISSKGPI 175


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 674 RDEQTKLEM---KHRQEEDVCTGILRNLXXKKXKXREGIPGPIGTAN 805
           RDE+   E+   +HRQ  + CT ILR    KK +  + +      AN
Sbjct: 854 RDEKRNSEVDIERHRQTVESCTNILREKEAKKVQCAQVVADYTAKAN 900


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNV 413
           F C +CG  + +     ++H+TE + +Y       I P  L N    I  AL +
Sbjct: 397 FPCEICGNYVYMGRKAFDKHFTEQRHIY-GLKCLGISPSPLFNQITSIDEALQL 449


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 727 TNVFFLPVFHFKFGLLISIQVAV**VFSRPMVGFLELC 614
           TN+F LP        L  +QVAV  VFS+ +  +L +C
Sbjct: 106 TNLFSLPANKISIPGLTGVQVAVKDVFSKSLQLYLLVC 143


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 176 KQVLS*KFGRYILLTICVHVIITNYT*FTLMLITFGFLHLTLLRCYRGSPVVC 18
           K+V S   GR I++ + +  I+   T  TL L  FG   L L+  ++   V C
Sbjct: 72  KEVRSNVSGREIIIKMIITFILVQTTLITLDLYVFGATGLGLILSWKLFEVAC 124


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
            Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 244  SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
            +G + V    P+     +T  S+G  T   T + T   +V     TP W +E +++    
Sbjct: 923  AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVG 982

Query: 424  ITTS-TNRSEDTSGTAM 471
             TT+       T+GT +
Sbjct: 983  FTTTIATPVGTTAGTVL 999



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 244  SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
            +G + V    P+     +T  S+G  T   T + T   +V     TP W +E +++    
Sbjct: 815  AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTETVTSGSVG 874

Query: 424  ITTS-TNRSEDTSGTAM 471
             TT+       T+GT +
Sbjct: 875  FTTTIATPIGSTAGTVL 891



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 244  SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
            +G + V    P+     +T  S+G  T   T + T   +V     TP W +E +++    
Sbjct: 887  AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 946

Query: 424  ITTS-TNRSEDTSGTAM 471
             TT+       T+GT +
Sbjct: 947  FTTTIATPIGTTAGTVL 963



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 244  SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
            +G + V    P+     +T  S+G  T   T + T   +V     TP W +E +++    
Sbjct: 959  AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 1018

Query: 424  ITTS-TNRSEDTSGTAM 471
             TT+       T+GT +
Sbjct: 1019 FTTTIATPIGTTAGTVL 1035



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 295 ITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTS-TNRSEDTSGTAM 471
           +T  S+G  T   T + T   +V     TP W +E +++     TT+       T+GT +
Sbjct: 688 VTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVL 747



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
           +G + V    P+     +T  SIG  T   T + +   +V     TP W +E +++    
Sbjct: 707 AGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVLVDVPTPSWVTETVTSGSVG 766

Query: 424 ITTS-TNRSEDTSGTAM 471
            TT+       T+GT +
Sbjct: 767 FTTTIATPIGSTAGTVL 783



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
           +G + V    P+     +T  S+G  T   T + T   +V     TP W +E +++    
Sbjct: 779 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 838

Query: 424 ITTS 435
            TT+
Sbjct: 839 FTTT 842


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
           +G + V    P+     +T  S+G  T   T + T   +V     TP W +E +++    
Sbjct: 714 AGTVVVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVG 773

Query: 424 ITTS-TNRSEDTSGTAM 471
            TT+       T+GT +
Sbjct: 774 FTTTIATPVGTTAGTVL 790


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 291 TYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNYVNEQIRGYIRN 464
           TYYN+ H+     +Y  + +  + P  L N ++   +AL    +N   ++      RN
Sbjct: 453 TYYNDHHFHWGYHIYACAVIGLLDPSWLVNDNIRYVNALLRDSANPSESDTYFAMFRN 510


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -3

Query: 532 PCWRRVDAPPLVARIGDSSGSWLFLMY 452
           P W+  D   + A + D++  W F ++
Sbjct: 117 PAWKHADYDGVAASVNDNNNDWKFFVF 143


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 370 TWTTPQWASEALSTCPKAITTSTNR---SEDTSGTAMSQNCLRSGRPTVERP 516
           T T+    S + ST P    +S N    S   SG A SQ      RPT +RP
Sbjct: 31  TSTSAGHPSSSSSTLPNYAASSLNSRPVSSSGSGNAYSQAPYPPARPTSQRP 82


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 707 GVSFQVWFAHLDPSSS 660
           G  FQ+W AH  PSSS
Sbjct: 257 GFKFQIWKAHNPPSSS 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,156
Number of Sequences: 5004
Number of extensions: 76316
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)