Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30419.Seq
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396           32   0.71 
02_04_0097 - 19673312-19673836                                         29   3.8  
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127...    29   6.6  

>10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396
          Length = 217

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 372 LDNSSVGIRSALNVPKSNNYVNEQIRGYIRNSHEPELSPIRATNG 506
           LD+  V ++S L V    + V   +RG+ R  HE  LSP+R  +G
Sbjct: 140 LDSGGVELQSTLGVNVGEDLV--LVRGWPRRCHELRLSPVRGEDG 182


>02_04_0097 - 19673312-19673836
          Length = 174

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 574 ESPVLVVRGITR*LPCWRRVDAPPLVARIGDSSGSWLFL 458
           E   +V   +   LP W R   PP ++ IG     WL+L
Sbjct: 75  EEKTVVPAALAPPLPAWTRAAFPPPISVIGAGGKPWLYL 113


>12_01_0171 -
           1268803-1269500,1271491-1271567,1271941-1272065,
           1272146-1272234,1272851-1272936,1273509-1273765
          Length = 443

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 376 TTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSK 531
           ++P  AS + S      + S++ SED+S + MS  C R  RP  E+    +K
Sbjct: 5   SSPDPASSSPSASSSPSSPSSSSSEDSS-SPMSMPCKRRARPRTEKSTGKAK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,723,383
Number of Sequences: 37544
Number of extensions: 525616
Number of successful extensions: 1392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)