Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30419.Seq
(894 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 32 0.72
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 30 2.2
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 30 2.2
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 30 2.9
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 29 5.1
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 37.5 bits (83), Expect = 0.014
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
FKC CG L +KTY Q K YC +H PK + L+N + + +
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272
Query: 420 SNNYVNEQIRG-YIRNSHEPE-LSPIRATNGGASTRLQQGS 536
EQ RG Y S +PE L I ++ Q GS
Sbjct: 273 QYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGS 313
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 32.7 bits (71), Expect = 0.41
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 175 FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
F+ NE QVDR G +FTF ++P + N P R I GR+ K +A ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156
Query: 355 RSVRATWTTPQWASEALSTC 414
++ + Q +EA+ C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 31.9 bits (69), Expect = 0.72
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +1
Query: 415 PKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVREIRRQRPPH 594
P + + RS +S + S RPT RP S A YP RQ P H
Sbjct: 380 PGSAVGESGRSSRSSSSPPSAYSAEQERPTTSRP--SHTSATEYYP-------DRQAPGH 430
Query: 595 ST---RLKANRAPESLPSAERKPIRL 663
T N APES P+A+ P L
Sbjct: 431 RTPDRHTHNNHAPESYPAAQHTPEHL 456
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 6 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 398 KRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGDQRWSVHASPARELSRDTPDYQYGRFD 577
K Q KQ ++ D QE+P + P ++ + ++ +E TPD++ D
Sbjct: 765 KHDQEQDKQ-VKDENDFDQKQEKPHQKH-DKPVQEQLNYSSTDKKEA---TPDHKEANLD 819
Query: 578 ASALHIAHALKQTELQKAYHR----PRENLLDCYLDRDEQTK 691
+ + + +Q E + YH P+E++ D D+ +T+
Sbjct: 820 ETRITVKPGQEQNEANQEYHNRGSDPQESISDLKRDKPNETR 861
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
QLL H +R Q+ Q++ +Q+ Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 298 TITSIGRKTKKYTA----LATYQRSVRATWTTPQWASEALS-TCPKAITTSTNRSEDTSG 462
T ++ TK Y+A +AT + AT T +++ S TCP T + S +
Sbjct: 356 TCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCYSVTCPTVATNTKGYSVMCAT 415
Query: 463 TAMSQNCLRSGRPTV 507
A + C R+ R TV
Sbjct: 416 VATNTKCYRAMRGTV 430
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 467 P*ARTVSDPGDQRWSVHASPARELSRDTPDYQYG 568
P A ++DP RW V AS +LS D P+++ G
Sbjct: 1162 PQANRIADPVSSRWGVDAS--LKLSADPPEFKPG 1193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,384,143
Number of Sequences: 59808
Number of extensions: 616980
Number of successful extensions: 1846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1840
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -