Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30419.Seq
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    31   0.78 
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    31   0.78 
At1g31150.1 68414.m03811 expressed protein EST gb|Z33866 comes f...    31   0.78 
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    29   4.2  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    29   4.2  
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    29   5.5  
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    29   5.5  
At2g33845.1 68415.m04154 DNA-binding protein-related contains we...    28   7.3  
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ...    28   9.6  
At4g05145.1 68417.m00771 hypothetical protein                          28   9.6  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRSGR 498
            LRS +
Sbjct: 1616 LRSDK 1620


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRSGR 498
            LRS +
Sbjct: 1616 LRSDK 1620


>At1g31150.1 68414.m03811 expressed protein EST gb|Z33866 comes from
           this gene
          Length = 673

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 581 SALHIAHALKQTELQKAYHRPRENLLDCYLDRDEQTKLEMKHRQ 712
           S+LHIA A KQ + Q+   + +ENL+ C    D+    ++ HRQ
Sbjct: 613 SSLHIARAHKQEQQQQQTDKLKENLMVCQRHEDD----DIMHRQ 652


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 463 TAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVREIRRQRPPHSTRLKANRAPESL-PS 639
           ++ SQ+       + ER R S+  +    P  P+R++    P  S RL   R PESL PS
Sbjct: 58  SSSSQSVAAKRAVSAERKRPSTPPSPT-SPSTPIRDLSIDLPASSRRLSTGRLPESLWPS 116

Query: 640 AER 648
             R
Sbjct: 117 TMR 119


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 463 TAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVREIRRQRPPHSTRLKANRAPESL-PS 639
           ++ SQ+       + ER R S+  +    P  P+R++    P  S RL   R PESL PS
Sbjct: 58  SSSSQSVAAKRAVSAERKRPSTPPSPT-SPSTPIRDLSIDLPASSRRLSTGRLPESLWPS 116

Query: 640 AER 648
             R
Sbjct: 117 TMR 119


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 26/89 (29%), Positives = 40/89 (44%)
 Frame = +2

Query: 323 QRSILL*PRTKDRSGPLGQLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGDQ 502
           Q   LL  R + +     Q    HQ++ Q+ Q+Q  +Q+  Q+ HQ QP       P  Q
Sbjct: 112 QMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP-------PSQQ 164

Query: 503 RWSVHASPARELSRDTPDYQYGRFDASAL 589
           +    ++P  +  + TP  Q  R D S L
Sbjct: 165 Q-QQQSTPQHQ-QQPTPQQQPQRRDGSHL 191


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 443 DQRIHQEQP*ARTVSD------PGDQRWSVHASPARE 535
           D+   QE P + TVSD      PG  RWS++  PA+E
Sbjct: 610 DKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAKE 646


>At2g33845.1 68415.m04154 DNA-binding protein-related contains weak
           similarity to G-quartet DNA binding protein 3
           [Tetrahymena thermophila] gi|4583503|gb|AAD25098
          Length = 182

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 559 PVREIRRQRPPHS-TRLKANRAPESLPSAERKPI 657
           P R+ R   PP S TR   N+ P+  P  ++KP+
Sbjct: 23  PRRQGRNPPPPSSSTRTSQNQPPQHTPQEKKKPV 56


>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 345

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 CAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVP 353
           C +CG  + +  YY+ +    D ++YC+ + P
Sbjct: 83  CDLCGKSINVNLYYSCKICDFDVDLYCAKYPP 114


>At4g05145.1 68417.m00771 hypothetical protein
          Length = 219

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 692 VWFAHLDPSSSLIGFLSADGRL 627
           +WF+H  P  S   +L+A GRL
Sbjct: 56  IWFSHATPKYSFCSWLAAHGRL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,332
Number of Sequences: 28952
Number of extensions: 413070
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)