Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30418.Seq
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    36   0.006
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    30   0.37 
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    29   0.86 
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    28   2.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   3.5  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   4.6  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 538 YAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESK 687
           Y+P  +P+   +  I+ ++ G  HT++L +   ++  G+N  GQCG E K
Sbjct: 22  YSPQIVPF---DRAIEKISCGGNHTLLLDEDSQLWACGDNRKGQCGYEVK 68


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +1

Query: 556 PYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQWKSIKVVW 717
           PY S     + ++ GRA  ++L++K  +          CG   K  W +  + W
Sbjct: 130 PYYSTRSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQADCGAVYKISWYTTYIAW 183


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
           EI  +A G  H I LT    VYT GN    Q GR
Sbjct: 227 EICQLATGTDHIIALTTTGKVYTWGNGQQFQLGR 260


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 552 INRCIAKQKFQRMISRGEWYPIWESVLIPVPK 457
           ++ CI K+ +++M+SR   YP +   ++P+P+
Sbjct: 137 LSACIPKEIYEKMLSRARMYPYF---VLPLPR 165


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 550 YIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
           +IP   +  ++  ++    H++ LT    +Y+ G N  G+ G
Sbjct: 239 FIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELG 280


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 139 TGLRRCIKNLAAYILIKFPSIPQSKNKLYL 50
           + +  CI+NL  +I+   PS+P +  K Y+
Sbjct: 236 SSINECIENLEYFIVTDQPSVPPATEKDYV 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,324
Number of Sequences: 5004
Number of extensions: 69103
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)