Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30418.Seq
(872 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08) 42 9e-04
SB_17186| Best HMM Match : RCC1 (HMM E-Value=1.5e-19) 36 0.033
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 36 0.033
SB_2363| Best HMM Match : RCC1 (HMM E-Value=0.00041) 36 0.033
SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14) 33 0.23
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 33 0.23
SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
SB_18907| Best HMM Match : RCC1 (HMM E-Value=0) 32 0.53
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 32 0.53
SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) 32 0.70
SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0) 30 2.8
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12) 30 2.8
SB_58605| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072) 29 5.0
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 29 5.0
SB_5067| Best HMM Match : RCC1 (HMM E-Value=4.5e-16) 29 6.6
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
Length = 970
Score = 41.5 bits (93), Expect = 9e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQWK 699
+ VAAGRAH+ LT VYT G+N YGQ G +K +K
Sbjct: 231 VSQVAAGRAHSAFLTKDGCVYTCGSNQYGQLGYYTKETYK 270
>SB_17186| Best HMM Match : RCC1 (HMM E-Value=1.5e-19)
Length = 637
Score = 36.3 bits (80), Expect = 0.033
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
++ G +H + LT VY GNN+ GQCG+
Sbjct: 567 ISVGDSHCVALTQDNNVYAWGNNSMGQCGQ 596
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 571 ECEIKAVAAGRA---HTIILTDKEGVYTLGNNAYGQCGRESKCQWKSIKVV 714
EC +K+V++ + HT+ LT VY+ G+ YG+ G + K K+V
Sbjct: 381 ECLVKSVSSSKGSDGHTLALTLDGKVYSWGDGDYGKLGHGNSQTQKIPKLV 431
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 36.3 bits (80), Expect = 0.033
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
SL I VA G AHT++LT V+ G+N +GQ G
Sbjct: 33 SLPHGISKVALGTAHTVLLTFNHEVFAFGDNNFGQLG 69
Score = 31.5 bits (68), Expect = 0.93
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+A G H+++L D Y G+++ GQCG
Sbjct: 93 IACGGQHSVVLLDNGETYAWGDSSSGQCG 121
>SB_2363| Best HMM Match : RCC1 (HMM E-Value=0.00041)
Length = 234
Score = 36.3 bits (80), Expect = 0.033
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
++ G +H + LT VY GNN+ GQCG+
Sbjct: 64 ISVGDSHCVALTQDNNVYAWGNNSMGQCGQ 93
>SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)
Length = 350
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
I + GR HT+ILTD V+ G+N GQ G+
Sbjct: 30 IVQASCGRGHTLILTDAGLVFGFGDNKLGQIGQ 62
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRE 681
+IK V G HT+ L ++ V+T G YG+ G +
Sbjct: 159 KIKDVVCGNNHTMALDEQGRVFTWGFGGYGRLGHQ 193
>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 964
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 586 AVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+VA G +HT++L +Y+ G+N++GQ G
Sbjct: 587 SVAMGTSHTLVLLQNGKLYSFGSNSFGQLG 616
>SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 32.7 bits (71), Expect = 0.40
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRESK 687
+ G AH++ L+D +Y+ G N+YGQ G +K
Sbjct: 167 ILCGYAHSLALSDAGCIYSWGANSYGQLGTGNK 199
>SB_18907| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 444
Score = 32.3 bits (70), Expect = 0.53
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKC 690
+A+G HT LT ++TLG GQ GR +C
Sbjct: 197 IASGNDHTAALTTSGNLFTLGCAEQGQLGRVKEC 230
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
I V +G HT+ L+ VYT G N G GRE+
Sbjct: 85 IVQVESGGMHTVALSKDGKVYTWGCNDDGALGRET 119
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 532 LSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
+S PI P ++ ++ V+ G++H ++T + YT G+N+ GQ G+
Sbjct: 73 VSMFPIETPVRA---QLGEVSVGQSHVAVVTLERAAYTWGDNSRGQLGQ 118
>SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)
Length = 447
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 571 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
E +I VA G H+ L +K ++ G+N YGQ G
Sbjct: 274 EHKISRVACGSFHSAALAEKGRMFCCGDNTYGQLG 308
>SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 532 LSYAPIYIPYKSLECEIKAVAAGRAHTIILTDK--EGVYTLGNNAYGQCGR 678
L Y P+++P + CE RA++I LTD+ +G + Y CG+
Sbjct: 57 LGYPPMHVPAWQITCETLRSRDERAYSIQLTDRRNKGPRSSDVTCYNSCGK 107
>SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ + G HT ++TD +YT G N GQ G
Sbjct: 87 DVLCITGGGGHTAMITDSRELYTCGWNNRGQLG 119
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 586 AVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
A +G A T+ LTD + V++ G+ YG+ GR
Sbjct: 2577 ACGSGDAQTLCLTDDDCVWSWGDGDYGKLGR 2607
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H + TD VYT G+N GQ G
Sbjct: 2678 KVITIATGSLHCVASTDTGEVYTWGDNDEGQLG 2710
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
+I VA G H + +TD V+ G+N +GQ G +
Sbjct: 1733 KIVDVAVGALHCLAVTDSGQVFAWGDNDHGQQGNNT 1768
>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 651
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+ AV+AG H++ LT V+T G A+G+ G
Sbjct: 234 VVAVSAGSGHSLALTADGAVFTWGFGAHGRLG 265
>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
Length = 469
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 472 QYRFPNWIPFTTRNHPLELLL---SYAPIYIPYKSLECEIKAVAAGR 603
+ +F NWIP+ PLELL SY P+ P E E + + A R
Sbjct: 407 EIQFENWIPYFCFVLPLELLQHYPSYRPVLTPATKPEEEPQQITAYR 453
>SB_58605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 628 KEGVYTLGNNAYGQCGRESKCQWKSIKV 711
KEG +G+ +YG C R S WK++KV
Sbjct: 183 KEGGLVMGSGSYGACQRLS--MWKNLKV 208
>SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)
Length = 677
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 544 PIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
P+Y+ S + + AV G H++ L+ + VY+ G +GQ G +S
Sbjct: 58 PVYVTELS-DKKCIAVVCGHYHSLALSADQQVYSWGWGVHGQLGLDS 103
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQ 693
V+ G H + LTD VY G N GQ G + CQ
Sbjct: 758 VSVGSIHCLALTDAGEVYCWGRNDQGQLG-DIDCQ 791
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 586 AVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
A +G AHT+ D V++ G+ YG+ GR
Sbjct: 653 ACGSGDAHTLAAADDGTVWSWGDGDYGKLGR 683
>SB_5067| Best HMM Match : RCC1 (HMM E-Value=4.5e-16)
Length = 390
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G +HT+++T +++ GN GQ G
Sbjct: 123 QVTHIACGSSHTLVITGDGRLFSWGNGNSGQLG 155
>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 407 GYGFTVASIKTSEQHKVFGT-GINTDSQIGYHSPREIILWNFCLAMHLFI 553
GYG + + V G G+N + + H E++L + CLA +F+
Sbjct: 548 GYGLGIVQSARQFANLVAGLQGVNLEGMLLNHCKEELLLGDNCLARSIFV 597
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,932,043
Number of Sequences: 59808
Number of extensions: 514157
Number of successful extensions: 1171
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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