Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30418.Seq
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    44   1e-04
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    43   3e-04
Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical ...    42   4e-04
AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical ...    42   4e-04
Z83115-1|CAB05555.1|  178|Caenorhabditis elegans Hypothetical pr...    38   0.012
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    37   0.016
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    37   0.016
AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    34   0.15 
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +1

Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQWK 699
           +I  ++AGR+HT+ +TD   V+  G+N +GQ G ESK  W+
Sbjct: 95  KIIQISAGRSHTVSVTDDGRVFAWGSNEHGQLGMESKFTWQ 135



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQ 693
           + +V  G  HT+ LT    ++++G+N  GQ GR S+ +
Sbjct: 43  VTSVTCGEQHTVFLTKDGKMWSVGSNMDGQLGRGSRTE 80



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 592 AAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQ 693
           A G  HT++LT     ++ G++A GQCG   K +
Sbjct: 248 ACGDNHTVLLTHCGRTFSFGSDALGQCGFGKKVE 281


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
           L C++  +A GRAHT++LTD   V   G+ +YGQ G
Sbjct: 878 LICKVTQIACGRAHTVVLTDTGRVLVCGSGSYGQMG 913



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 589  VAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQWKSIKV 711
            V+ G  HTI  TD   V+  G N +GQCG  +K    S  V
Sbjct: 1079 VSLGNNHTIASTDDGSVFAWGKNDFGQCGVLTKKNGNSADV 1119



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 583 KAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
           +A+A G  H ++L+    +   G N +GQCG
Sbjct: 779 RAIACGAEHILVLSSSGQLSAWGGNRFGQCG 809


>Z82080-8|CAD92382.3|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N +GQCGR
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDNNFGQCGR 155


>AL032625-7|CAN86642.1|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N +GQCGR
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDNNFGQCGR 155


>AL023854-1|CAH60790.2|  404|Caenorhabditis elegans Hypothetical
           protein W09G3.7a protein.
          Length = 404

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 538 YAPIYIPYKSLEC---EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGR 678
           Y   YI  K +     EI  +++GRAH++I T+  GV+ +G+N +GQCGR
Sbjct: 107 YQDYYISAKKINIPGDEILEISSGRAHSLIRTNL-GVFAIGDNNFGQCGR 155


>Z83115-1|CAB05555.1|  178|Caenorhabditis elegans Hypothetical
           protein K11D2.1 protein.
          Length = 178

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 544 PIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRE 681
           P++I  + +   IK VA G  HT+ LT+    YT G N YGQ G++
Sbjct: 124 PVHIE-QLVGIRIKKVACGGWHTVALTEGGDAYTWGWNRYGQLGKD 168


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 514 HPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
           HP  ++LS  P  +   S+ C       G  HT++L     V+T G+N +GQ G
Sbjct: 754 HPSRVILSQGPHDVKVSSVSC-------GNFHTVLLASDRRVFTFGSNCHGQLG 800



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES--KCQWKSI 705
           I  VAAG  HTI+  +   V+T G    GQ  R +  K  W +I
Sbjct: 821 IVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAI 864


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 514 HPLELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
           HP  ++LS  P  +   S+ C       G  HT++L     V+T G+N +GQ G
Sbjct: 754 HPSRVILSQGPHDVKVSSVSC-------GNFHTVLLASDRRVFTFGSNCHGQLG 800



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES--KCQWKSI 705
           I  VAAG  HTI+  +   V+T G    GQ  R +  K  W +I
Sbjct: 821 IVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAI 864


>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +1

Query: 553 IPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQWKSIKVVW*L--I 726
           IP       IK VA  + HT++LT+   ++  G+N+ GQ G     + ++ ++V  L   
Sbjct: 460 IPDLPSRISIKQVALSKTHTMVLTNDNELFGFGDNSCGQLGFGKFSKMENGRLVESLKGR 519

Query: 727 TYKSLGXGSXX*V-CCGQDS*VRFLT 801
             +S+G G+   V CC + + + F T
Sbjct: 520 DIQSVGVGNYFSVICCDRGTLLTFGT 545


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 600 SRCHCFNLTLQALVRYINRCIAKQKFQRMISRGEWYPIWESVLIPVPKTL--CCSEVFIE 427
           +R +  +L +Q++VR +NR     +F   I   EWYP       P P  L  C   V I 
Sbjct: 699 ARKNSSSLPVQSVVRKMNRQAPNAQFWNDIPHDEWYP-------PTPLDLLECLLNVSIS 751

Query: 426 ATVKP*PQAMFVISNLSAKED 364
            ++K      +VI  +S   +
Sbjct: 752 ESIKRELVVQYVIDWISTSPE 772


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 391 NKHSLWLRFHSSLNKNFRAAQSFRYRYQYRFPNWIPFTTRNHPLELLLSYAPIYI 555
           N  S+W    ++L +++     F    +YR  N I + T  +P   L++YA IY+
Sbjct: 11  NLSSIWYTILTTLLQSYLLYLGFE---RYRLYNEIKWPTGGYPYGYLMAYATIYL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,941
Number of Sequences: 27780
Number of extensions: 386362
Number of successful extensions: 1071
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)