Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30418.Seq
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.1  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 700 SSIDIYFPYRTDHMHCYLMYRHLL 629
           S+I I FP RTD  H Y ++ H L
Sbjct: 168 SAITI-FPQRTDGKHDYRVWNHQL 190


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 287 PEHLSQQIPTHDSSV 243
           P HLS  +PT DS+V
Sbjct: 11  PHHLSPNMPTMDSTV 25


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 437 TSEQHKVFGTGINTDSQIGYHSPREIILW 523
           TS+QHK F   IN  +    +  ++  +W
Sbjct: 123 TSDQHKWFQMSINNTNNNNTNKYKDYYIW 151


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 225 PISKSTDRRVMCGDLLRQVLWVSTSHVA 308
           P+     RRV C  L  Q  W+S +H A
Sbjct: 53  PLLPLRHRRVTCDVLSWQSKWLSINHSA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,114
Number of Sequences: 438
Number of extensions: 5178
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)