Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30418.Seq
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 39 0.005
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 39 0.005
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 37 0.015
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 37 0.015
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 36 0.027
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 36 0.035
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 34 0.11
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 33 0.19
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 33 0.19
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 33 0.19
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 33 0.25
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 32 0.58
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 32 0.58
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 31 0.76
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 31 1.0
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 31 1.0
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 31 1.0
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 30 1.8
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 30 1.8
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 30 1.8
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr... 30 1.8
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 30 2.3
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 30 2.3
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 30 2.3
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 29 3.1
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 29 3.1
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 29 3.1
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.1
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR... 29 4.1
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 29 5.4
At1g30930.1 68414.m03786 F-box family protein contains F-box dom... 29 5.4
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 28 7.1
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy... 28 7.1
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
+KAVAA + HT+I T+ VYT G+N GQ G S
Sbjct: 247 VKAVAAAKHHTVIATEGGDVYTWGSNREGQLGYTS 281
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
SL+ +I AV+A HT +++D V+T G N GQ G
Sbjct: 293 SLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLG 329
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
+KAVAA + HT+I T+ VYT G+N GQ G S
Sbjct: 244 VKAVAAAKHHTVIATEGGDVYTWGSNREGQLGYTS 278
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
SL+ +I AV+A HT +++D V+T G N GQ G
Sbjct: 290 SLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLG 326
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 490 WIPFTTRNHPLELLLSYAPIYIPYKSL-ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYG 666
W T HP E P + KSL +I A G H + + D+ Y G N YG
Sbjct: 64 WNQRGTLGHPPETKTESTPSLV--KSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 121
Query: 667 QCGRE 681
QCG E
Sbjct: 122 QCGEE 126
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H + L + ++ GNN YGQ G
Sbjct: 198 VRLIAVGAFHNLALKEDGTLWAWGNNEYGQLG 229
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
IKA++ G H+ +TD G+ T G YGQCG
Sbjct: 312 IKAISCGGRHSAAITDAGGLITFGWGLYGQCG 343
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+++VAAG HTI ++ VY G N +GQ G
Sbjct: 364 MESVAAGLWHTICISSDGKVYAFGGNQFGQLG 395
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
+K +A G H+ ++TD + T G YGQCG+ S
Sbjct: 313 VKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGS 347
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+K ++ G HT ++TD+ V+ G N YGQ G
Sbjct: 419 VKTISCGARHTAVITDEGRVFCWGWNKYGQLG 450
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
L I+ VAAG HT + VY G N +GQ G
Sbjct: 361 LGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLG 396
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 35.9 bits (79), Expect = 0.035
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 523 ELLLSYAPIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRE-SKCQWK 699
E+LL P+ + + +++ VA G +HT++ + + G N+YGQ E S W
Sbjct: 331 EMLLRNVPVLV----IPTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWY 386
Query: 700 SIKVVW*LITYKSLGXG 750
V W + + L G
Sbjct: 387 PSPVDWCVGQVRKLAAG 403
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
+I ++ G HT L+D VYT G + GQ G S
Sbjct: 228 KIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVS 263
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 541 APIYIPYKSLECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+P + + L +I ++AAG AHTI LT VY+ G +G+ G
Sbjct: 5 SPTLLISEDLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLG 49
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
I VAAG H++ ++D V+ G N YGQ G
Sbjct: 75 IVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLG 106
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
I AVA G AHT+ LT+ V+ G N GQ G
Sbjct: 84 ITAVACGGAHTLFLTETRRVFATGLNDCGQLG 115
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
W P S IT +ACG T+ +E +VF TG+N Q+G
Sbjct: 71 WTPAVCSALSDHSITAVACGGAHTLF---LTETRRVFATGLNDCGQLG 115
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+E ++ +A G H +LT K +YT G GQ G
Sbjct: 561 VEASVEEIACGSYHVAVLTSKSEIYTWGKGLNGQLG 596
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
VA G + T+ T + VYT+G+ AYGQ G
Sbjct: 516 VACGHSLTVSRTSRGHVYTMGSTAYGQLG 544
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEG-VYTLGNNAYGQCG-RESKCQW 696
I VA G HT+ + DK G VYT G YG+ G RE K +W
Sbjct: 237 IVKVACGTNHTVAV-DKNGYVYTWGFGGYGRLGHREQKDEW 276
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+I AAGR HT++++D G N YGQ G
Sbjct: 111 KIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQLG 143
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRE 511
++TN+ACG FTV + ++E + G+ Q+G+ + E
Sbjct: 168 EVTNVACGADFTV-WLSSTEGASILTAGLPQYGQLGHGTDNE 208
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRE 681
+I A G H + + D+ Y G N YGQCG E
Sbjct: 92 KITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 553 IPYKSLE-CEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+P + L+ + +AAG H+ LTDK VY G +G+ G
Sbjct: 240 VPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLG 281
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H + L + + GNN YGQ G
Sbjct: 198 VRLIAVGAFHNLALEEDGRLLAWGNNEYGQLG 229
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
VA G + T+ LT VYT+G+ YGQ G
Sbjct: 557 VACGHSLTVALTTSGHVYTMGSPVYGQLG 585
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H +LT + VYT G + G+ G
Sbjct: 606 VEEIACGAYHVAVLTSRTEVYTWGKGSNGRLG 637
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
VA G + T+ LT VYT+G+ YGQ G
Sbjct: 521 VACGHSLTVALTTSGHVYTMGSPVYGQLG 549
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H +LT + VYT G + G+ G
Sbjct: 570 VEEIACGAYHVAVLTSRTEVYTWGKGSNGRLG 601
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
VA G + T+ LT VYT+G+ YGQ G
Sbjct: 499 VACGHSLTVGLTTSGKVYTMGSTVYGQLG 527
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H +LT + V+T G A G+ G
Sbjct: 548 VEEIACGAYHVAVLTSRNEVFTWGKGANGRLG 579
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESKCQWKSIKVVW*LIT--YKSLGXGS 753
++ ++ G H +LT + V+T G + G+ G K K+ +V L KS+ G+
Sbjct: 1477 VEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGA 1536
Query: 754 XX*VCCG 774
VC G
Sbjct: 1537 DQSVCSG 1543
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 568 LECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G T+ LT V+T+G ++GQ G
Sbjct: 1421 IDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLG 1456
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 583 KAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
K VAAG T+ L+ + YT G+N +GQ G
Sbjct: 219 KQVAAGLHFTVFLSREGHAYTCGSNTHGQLG 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +1
Query: 568 LEC----EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
LEC + V+ G HTI++T + ++ G+N Q G +S
Sbjct: 424 LECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDS 466
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 583 KAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
K VAAG T+ L+ + YT G+N +GQ G
Sbjct: 219 KQVAAGLHFTVFLSREGHAYTCGSNTHGQLG 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +1
Query: 568 LEC----EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRES 684
LEC + V+ G HTI++T + ++ G+N Q G +S
Sbjct: 424 LECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDS 466
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
E AG H++ +T K VYT G N GQ G
Sbjct: 144 EKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLG 176
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
E AG H++ +T K VYT G N GQ G
Sbjct: 44 EKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLG 76
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+A G T+ LT V+T+G A+GQ G
Sbjct: 477 IACGHTFTVALTTSGHVFTMGGTAHGQLG 505
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ +A G H +LT + V+T G A G+ G
Sbjct: 526 VEEIACGAHHVAVLTSRSEVFTWGKGANGRLG 557
>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
protein kinase family protein contains similarity to
light repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
PF00069: Protein kinase domain and PF00560: Leucine Rich
Repeat
Length = 929
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 285 WVSTSHVARKGKKVTKTTSNWFGIQ 359
WVS S + ++GK VT +NW +Q
Sbjct: 46 WVSDSEIIKQGKPVTLANTNWNSMQ 70
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRESK 687
++ +A G H++IL + + G+N YGQ GR +
Sbjct: 287 KVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQ 323
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+K +A+G H +LT VYT G GQ G
Sbjct: 565 VKDIASGSHHVAVLTSFGNVYTWGKGMNGQLG 596
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
I AAG +H+ ++D ++T GN ++GQ G
Sbjct: 102 ITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLG 133
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
I +A G AH I LT V+T G + GQ G
Sbjct: 50 ISMLACGGAHVIALTSGGKVFTWGRGSSGQLG 81
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
W PM E IT IACG G+ S+ +E+ KV G Q+G S R
Sbjct: 234 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 283
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 571 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRE 681
E I+ +A G H++ LT + V+T G +G G +
Sbjct: 82 EHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHK 118
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
W PM E IT IACG G+ S+ +E+ KV G Q+G S R
Sbjct: 303 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 352
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 571 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCGRE 681
E I+ +A G H++ LT + V+T G +G G +
Sbjct: 151 EHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHK 187
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 589 VAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+A G + T+ LT V+T+G+ YGQ G
Sbjct: 510 IACGHSLTVGLTTSGQVFTMGSTVYGQLG 538
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
IK VAAG HT +T+ +Y G YG G
Sbjct: 174 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG 205
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 577 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
++ VA G HTI ++ +YT G + YGQ G
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 257
>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 992
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 440 SEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFI 553
SEQ + G ++D ++ +H + + W FC H F+
Sbjct: 950 SEQVSEYEDGYHSDRRLEFHEQKSLPGWGFCGIFHGFL 987
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 580 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQCG 675
+KA++ G HT +T + ++T G+ +G G
Sbjct: 405 VKAISCGPWHTAFVTSEGKLFTFGDGTFGALG 436
>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
Pfam:PF00646
Length = 376
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -3
Query: 627 VGQDYCVSTSRCHCFNLTLQALVR-------YINRCIAKQKFQRMISRGEWYPIWESVLI 469
V + S +RCHC + +A+ R ++ R A+ + ++ GEW W + +
Sbjct: 14 VSRSTAKSVARCHCVSKQWRAIFRRKYFIELFLTRSKARPRILFVVQDGEWSE-WSFLSL 72
Query: 468 PVPK 457
P P+
Sbjct: 73 PQPQ 76
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 174 KKVHDPSEEELLPIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKVTK 332
KK+ P++ +LP F T+ M L RQ L +++ G+ VTK
Sbjct: 512 KKIITPNKRHMLPYFVNSSLTETEFEKMIKKLHRQSLGQPELRISKAGRDVTK 564
>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
symporter (SUC2) nearly identical to sucrose-proton
symporter SUC2 [Arabidopsis thaliana] GI:407092
Length = 512
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 615 YCVSTSRCHCFNLTLQALVRYINRCIAKQK 526
YC + C ++TL +V +++ C K+K
Sbjct: 218 YCANLKTCFFLSITLLLIVTFVSLCYVKEK 247
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,541,624
Number of Sequences: 28952
Number of extensions: 356254
Number of successful extensions: 868
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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