Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30417.Seq
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    28   1.8  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    27   3.2  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    26   5.6  

>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 663 TEDPGSDKNRVKSVXKXEGAGSPTTWGHIQGRSHRXXT 776
           +E+  ++ +R+KS    E AG P +W  I G+  R  T
Sbjct: 233 SEEVQNEYHRLKSSIDEEFAGGPCSWASIFGKDIRYRT 270


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 693 VKSVXKXEGAGSPTTWGHIQGRSHRXXT 776
           +K+  + E AG P TWG I G   R  T
Sbjct: 239 IKTDCEAEMAGGPATWGDILGADIRYRT 266


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +3

Query: 636 LTIEANVISTEDPGSDKNRVKSVXKXEGAGSPTTWGHIQGRSHRXXT 776
           L IE  VI TE      + +KS  + E AG P TW  I G   R  T
Sbjct: 225 LPIEHEVIQTE-----YHVIKSDCEAELAGGPATWPEIFGPDIRYRT 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,845
Number of Sequences: 5004
Number of extensions: 39506
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)