Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30417.Seq
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z69637-2|CAA93466.1|  199|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    28   9.3  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    28   9.3  

>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
           K + AG+G  K+  +  KE KG  + +  K  + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358


>Z69637-2|CAA93466.1|  199|Caenorhabditis elegans Hypothetical
           protein F35G2.2 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 567 AERSRVHQD-HRVSLVXDRAGPVLLTIEANVISTEDPGSDKNRVKSVXKXEGAGSPTT 737
           A  SR H D H      ++AG +L T EA ++     GSD  + K V K     +P T
Sbjct: 135 AVSSRSHTDRHFAFKQMEQAGAILTTSEATILGLVG-GSDHPKFKEVQKLILTSAPDT 191


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 627  PVLLTIEANVISTEDPGSDKNRVKSVXKXEGAGSPTTWGHIQGRS 761
            P + T     +ST  PGS   +  +V     +GS  T G  +G S
Sbjct: 1198 PAISTSTQQSVSTNSPGSTVTQPSTVRGSTSSGSTVTTGSTEGSS 1242


>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 721 APSXLXTDFTRFLSEPGSSVEITFASIVKRTGPA 620
           +P+ L T  T     PG+S   T  ++VK  GPA
Sbjct: 268 SPNSLSTTTTTTSHNPGASATTTTTTVVKTCGPA 301


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 721 APSXLXTDFTRFLSEPGSSVEITFASIVKRTGPA 620
           +P+ L T  T     PG+S   T  ++VK  GPA
Sbjct: 585 SPNSLSTTTTTTSHNPGASATTTTTTVVKTCGPA 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,559
Number of Sequences: 27780
Number of extensions: 241030
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)