Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30415.Seq
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.2  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   9.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +2

Query: 68  ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 247
           A   D    + E   EE ++T      V +  AKK E+  +N        + +      G
Sbjct: 422 AFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNSCQYCNIAFG 481

Query: 248 DAEKATMHL 274
           DA   T+H+
Sbjct: 482 DAVLYTIHM 490


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 VAPEEVTSTEPKESPVKKSPAKKVEAAE 187
           VAPEE +S     S +  SPA  + + +
Sbjct: 9   VAPEESSSEVTSSSALVMSPANSLASTD 36


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 161 PAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATM 268
           P +K +  +    E G + +PE+     GD +  +M
Sbjct: 2   PRRKQDCPKRMKWEGGEEGSPEEGDKLEGDEDTGSM 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,771
Number of Sequences: 336
Number of extensions: 3725
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)