Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30415.Seq
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 31 0.22
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.29
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.29
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.51
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.89
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 28 2.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 3.6
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 3.6
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 6.3
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 6.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.3
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.3
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 8.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 8.3
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 86 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKAT 265
++D+ +P ++S K SP K+ +K ++A + TDE P D N + T
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 266 MHLRT 280
LRT
Sbjct: 646 SSLRT 650
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 95 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEK 259
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ E+
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 101 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEK 259
++ PE+ + + PVKK P+KK + A++N E DE + E D+EK
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.9 bits (64), Expect = 0.51
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = -1
Query: 282 TVLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 103
TV+ V +S + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 102 SFLSTAASAIV 70
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +2
Query: 68 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 247
++ D + K + + +S EP + VKK KK + E + E+ ++ + +S + +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQ--KKSKKKEESSSESESESSSSESESSSS 101
Query: 248 DAEKAT 265
++E ++
Sbjct: 102 ESESSS 107
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = +2
Query: 77 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 256
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 257 K 259
+
Sbjct: 236 E 236
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -1
Query: 318 PLHTSLFLFCGITVLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFL-AGDFLTG- 145
P TSL + T A ++SP S S +SS S P S +S + + ++G
Sbjct: 587 PSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGS 646
Query: 144 DSFGSVEVTSSGATSFLSTAASAIV 70
S S +++ +S LST +S+++
Sbjct: 647 SSILSSSISTIPISSSLSTYSSSVI 671
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 113 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG----DAEKATMHLRT 280
E+ + EP E+P S KVE A + AP + A + KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 281 VMPQKRKRLV 310
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 92 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGD-AEKATM 268
DK++ A ++ S E + K A K+E G +N ++ + E D AE+
Sbjct: 1282 DKQDTASKDKNSLETIDE--KMEDASKIEGDAKTGDDNEMEDLDKMEDLEKPDYAEEKDP 1339
Query: 269 HLRTVMPQKRKRL 307
++ TVM + R R+
Sbjct: 1340 YI-TVMSELRSRI 1351
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 113 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 217
+E + KES K++PA+K + + ENGT+E
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEE 85
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 92 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATMH 271
D+ A +E + E E + + E E ++ T+E P+++P E + +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 272 LRTVMP 289
V+P
Sbjct: 106 FYDVVP 111
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 470 PLEFNSHPHIPLLKCI 517
P+EF S PHI L CI
Sbjct: 86 PIEFTSFPHIDLSACI 101
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = -1
Query: 318 PLHTSLFLFCGITVLRCIVAFSASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDS 139
P +++ G T S+SPF + S +SVP S+ +++S+ ++
Sbjct: 269 PSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNT 328
Query: 138 FGSVEVTSSGATSFLST 88
+ T +G+ +F S+
Sbjct: 329 SVTYTGTGTGSATFTSS 345
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +2
Query: 452 TAMHQCPLEFNSHPHIPLLKCITPILIASY----YEG-LSSFVSDLSLGLY 589
TAM + P + P PLL +P+ Y Y G L +F D SLG +
Sbjct: 242 TAMQELPFSLDYRPFSPLLAWSSPLANVEYLALVYPGHLFAFRYDKSLGKF 292
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 98 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEKAT 265
++V ++TS EPK + KSP +K + ++ T++ DS +N +K+T
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKST 1028
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 116 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 256
EV++ EP+ PVK+ K E++ + + P++ E+ E
Sbjct: 389 EVSANEPQPRPVKEDVPKSQVGGETDTTDVINNSTPKEETEESPSTE 435
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 176 EAAESNGKENGTDEAPEDSPAENGD 250
E++E + ++N TDEA ED+ + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSD 379
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Frame = +2
Query: 71 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN----------GKENGTDEA 220
T + AV +KE +EV T PK S +K S + S ++ +
Sbjct: 743 TFNEEAVKQKETE-KEVPPTGPKASEIKDSVSSNNAVPSSTFNFVSPFAAVSEKTNENNI 801
Query: 221 PEDSPAENGDAEKATM 268
P D+ NG+A K T+
Sbjct: 802 PNDTTKTNGNATKRTL 817
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,668
Number of Sequences: 5004
Number of extensions: 59143
Number of successful extensions: 226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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