Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30415.Seq
(891 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 34 0.15
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.34
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.78
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 31 1.0
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 31 1.0
At4g31880.1 68417.m04531 expressed protein 31 1.0
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 30 1.8
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 30 1.8
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 30 1.8
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 30 2.4
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 2.4
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 3.1
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 3.1
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 29 3.1
At3g04820.1 68416.m00522 expressed protein contains PFam profile... 29 4.1
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 29 5.5
At3g24630.1 68416.m03093 hypothetical protein 29 5.5
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 29 5.5
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 29 5.5
At1g76820.1 68414.m08939 expressed protein 29 5.5
At1g68030.1 68414.m07772 PHD finger protein-related contains low... 29 5.5
At1g56660.1 68414.m06516 expressed protein 29 5.5
At1g09520.1 68414.m01067 expressed protein 29 5.5
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 28 7.2
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 7.2
At4g07380.1 68417.m01133 hypothetical protein 28 7.2
At2g25670.2 68415.m03077 expressed protein 28 7.2
At2g25670.1 68415.m03076 expressed protein 28 7.2
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 7.2
At5g19950.3 68418.m02375 expressed protein 28 9.6
At5g19950.2 68418.m02374 expressed protein 28 9.6
At5g19950.1 68418.m02373 expressed protein 28 9.6
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 28 9.6
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 28 9.6
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 74 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDA 253
M D + PE+ EPK+ + P K+ EA + GK+ G E+ E GD
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDK 121
Query: 254 EK 259
++
Sbjct: 122 KE 123
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 92 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 241
+K E APE EV S P E +++PA AAE N EN ++E E++P E
Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAEETPDE 116
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 95 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKA 262
KKE + E+ +S+E + P KK PA K+ + + D++ EDS E +KA
Sbjct: 153 KKESSSEDDSSSE--DEPAKK-PAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKA 205
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 113 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 241
++V + KE VKK P KKVE+++ + E+ +E + PA+
Sbjct: 42 KDVIAAVQKEKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAK 83
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 128 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 247
T+PK P + PA++ ++ + + DE+ ED +E G
Sbjct: 53 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKG 92
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 128 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 247
T+PK P + PA++ ++ + + DE+ ED +E G
Sbjct: 136 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKG 175
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Frame = +2
Query: 83 AAVDKKEVAPEEVTSTEPKESPVKKSPAK-----------KVEAAESNGKENGTDEAPED 229
A+ KKE + TS++ K PVK PAK S KE+ ++ E+
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEE 844
Query: 230 SPAENGDAEKA 262
+P E A KA
Sbjct: 845 TPKEPEPATKA 855
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 119 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEK 259
+ + + P KSP K + + ENG PE+ AEN +A++
Sbjct: 507 ILAASSSQEPSNKSP-KVISTDTKDASENGVASQPEEKQAENPNAKE 552
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 131 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATMHLRTVMPQKRKRL 307
EPK+ +E+ +S+ +ENG ED +G+ E +KRKRL
Sbjct: 31 EPKKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRL 89
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 92 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAA-----ESNGKENGTDEAPEDSPAENGDAE 256
DKKE EEV S PK KK +K EAA ES +++ + +D +N D+E
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSE 561
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 140 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKAT 265
ESP KS KK AAES ++G +E +SPA ++A+
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRAS 116
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 125 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA-ENGDAEKAT 265
S K+S V KK AAES ++G E +SPA ++G+ E AT
Sbjct: 56 SESEKQSFVLTRRKKKEGAAESPAVKSGKKEGAAESPAVKSGNNEGAT 103
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 104 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 232
V PEE++ ++PK+S A+K+E N KE T E P D+
Sbjct: 302 VNPEEISESKPKQS--VDEVARKIEGFHIN-KEGKTAEKPSDA 341
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 143 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 238
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPEDSPAENGDA 253
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E +A
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGETQTQTEAEA 474
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +2
Query: 95 KKEVAPEEVTSTEPKESPVKK--SPAKKVEAAESNGKENGTDE-APEDSPAE-NGDAEKA 262
K+E + T P ++K S A K E NG NG E A ED P+ + D K
Sbjct: 51 KQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPSSVSKDPAKT 110
Query: 263 TMHLRTVMPQKRKRL 307
T P+ K L
Sbjct: 111 TERFAPREPKPPKVL 125
>At3g04820.1 68416.m00522 expressed protein contains PFam profile
PF01142: Uncharacterized protein family UPF0024;
expression supported by MPSS
Length = 747
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 113 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATMHLRTVM 286
E+V STE E KS ++ E+N K+ TD + N D+E+ M L+ +
Sbjct: 646 EKVGSTEEIEDESMKSDTNPHDSGETNLKDQ-TDSNEAEKDTGNPDSEQTQMALKMAL 702
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 68 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 247
A + A + EV P+ +PKE PV A K +A + E D + A++
Sbjct: 393 AAPSKATPSETEVVPKAKAKPQPKEEPVS---APKPDATVAQNTEKAKDAVKVKNVADDD 449
Query: 248 DAE 256
D E
Sbjct: 450 DDE 452
>At3g24630.1 68416.m03093 hypothetical protein
Length = 724
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 110 PEEVTSTEPKESPVKKSPAKKVEAAESNG-KENGTDEAPEDSPAENGDAEKATMHLRTVM 286
P+ + + ++ VKK+ + E N +E PE++P+EN +R V
Sbjct: 276 PDILKLSSERQEKVKKNSKESPEIVRCNSTREAALQSLPEETPSENPSTIVLIRPMRVVK 335
Query: 287 PQ 292
P+
Sbjct: 336 PE 337
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +2
Query: 113 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE----APEDSPAENGDA 253
+E S+E +E VK + + E E+ + +G+D+ A ++SP +G+A
Sbjct: 8 DEAFSSEEEEERVKDNEEEDEEELEAVARSSGSDDDEVAAADESPVSDGEA 58
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +2
Query: 65 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 244
L T + V + EV P EP+E PV +P VE + N T EA S ++N
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVET-----RLNLTVEAASSSSSDN 194
>At1g76820.1 68414.m08939 expressed protein
Length = 266
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 74 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVE--AAESNGKENGTDEA-PED-SPAE 241
+ ++A KK + T ++ + K A+ E AA E D+A PE +P E
Sbjct: 167 LVESARSKKHKKKNKSGRTLQEDDDLDKLLAELGETPAAGKPASEEEKDQAQPEPVAPVE 226
Query: 242 N-GDAEKATMHLRTVMPQKRKR 304
N G+ EK + LR + P+KRKR
Sbjct: 227 NTGEKEKRRL-LRLLQPRKRKR 247
>At1g68030.1 68414.m07772 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 314
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 140 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEK 259
E+ + SP + E S+GKEN P D P G E+
Sbjct: 150 ENDTQVSPCSEEETLRSDGKENDRVTPPMDEPDLTGRTEE 189
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 92 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 241
+K E PEE KE + +K E E +GK+N E E E
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEE 189
>At1g09520.1 68414.m01067 expressed protein
Length = 260
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 98 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKAT 265
KE A + + E E V +K + KE D+ P+ SPA NG K T
Sbjct: 165 KEAALAKKRAREALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKET 220
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 95 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP--EDSPAENGDAEKA 262
+K PEE T E ++ + KK E N + G E P E ENG+AEK+
Sbjct: 177 RKRSEPEE-TKEETEDDDEESKRRKKEENVVEN--DEGVQETPVKETETKENGNAEKS 231
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 92 DKKEVAPEEVTSTEPK-ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATM 268
+ KE PE E + K+ +K E +S+ +E +E PE+ E +++
Sbjct: 328 ESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENE 387
Query: 269 HLRTVMPQKRKRLV*RGN 322
T + +K + GN
Sbjct: 388 IKETEIKEKEESSSQEGN 405
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 92 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA-PEDSPAENGDAEKATM 268
D + + EEV+ E + K K E ++NG++NGT+ PE + E A+K +
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVEL-PAKKRVV 143
Query: 269 HLRTVMP--QKRKR 304
+ +P RKR
Sbjct: 144 KNKAGLPGVNSRKR 157
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +2
Query: 95 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATMHL 274
K+ A E +++ K+ K+ K+ + ++N + DEA P E +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 275 RTVMPQKRKR 304
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +2
Query: 95 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEKATMHL 274
K+ A E +++ K+ K+ K+ + ++N + DEA P E +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 275 RTVMPQKRKR 304
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 107 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 232
A + TS E K+S KS + +GK+ EAPE++
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENN 256
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 140 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 244
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 140 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 244
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 140 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 244
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 80 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEK 259
D AV V S+ KE ++ +KK+E AE +EN +E + + +K
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 260 ATMHLRTVMPQK 295
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 80 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEK 259
D AV V S+ KE ++ +KK+E AE +EN +E + + +K
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 260 ATMHLRTVMPQK 295
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,607
Number of Sequences: 28952
Number of extensions: 305651
Number of successful extensions: 1051
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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