Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30413.Seq
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    67   1e-12
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    66   2e-12
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    62   3e-11
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   3.3  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.3  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    24   9.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   9.9  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 27/47 (57%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           +E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P GG
Sbjct: 23  IESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 28/47 (59%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           +E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P  G
Sbjct: 23  IESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 62.5 bits (145), Expect = 3e-11
 Identities = 25/47 (53%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           +E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P GG
Sbjct: 23  IESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGG 69


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 1    VEKILSSVGIEADAEKLKKVITELNG 78
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 119 SFSRPAAISCSTSLPLSSVITFLSFSASASIPT 21
           SF  P+A +   S P+SS+ +F + SA+++ P+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPS 483


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 268 TKLYKSTRRWSLFQFMF 318
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 113 SRPAAISCSTSLPLSSVITFLSFSASASIPTEL 15
           S P+A+S +TS+P  S+ + +S S S S  T L
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL 169


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 NFTKVRGAGRYSSLCFKSNMMASVF 346
           NF  +RG GRY++    S+ +A+V+
Sbjct: 122 NFYNLRGDGRYNAYDPSSDSLANVY 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,439
Number of Sequences: 5004
Number of extensions: 11759
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)