Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30413.Seq
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 62 3e-10
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 54 4e-08
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 54 4e-08
07_01_1001 - 8460467-8460799 38 0.003
07_03_0321 + 16757414-16757743 36 0.012
01_06_0098 - 26416768-26416998 31 0.46
12_01_0090 + 717524-719080 29 2.4
11_06_0264 - 21785450-21786928 27 5.6
06_03_0854 + 25400855-25403741,25406174-25407708 27 5.6
05_02_0121 - 6834843-6835127 27 7.4
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719... 27 9.8
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 27 9.8
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/48 (54%), Positives = 40/48 (83%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 23 IKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 54.4 bits (125), Expect = 4e-08
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 10 ILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+P GGG
Sbjct: 219 ILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 54.4 bits (125), Expect = 4e-08
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 10 ILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
IL SVG E D K++ ++++++GKD+ +LIA GREK +S+P GGG
Sbjct: 26 ILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 138
V IL +VG + D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 23 VRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 123
V IL +VG + D +KL + ++ GKD+ +++AAG E L+
Sbjct: 23 VRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKD 84
V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 21 VVKIIETVHIEADSAEFKSIVQRLTGKD 48
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 140 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIF 6
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>11_06_0264 - 21785450-21786928
Length = 492
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 143 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTE 18
PPP + + S AIS + V FL S++A IPTE
Sbjct: 384 PPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 143 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASAS 30
PPP I + A +S P+S+V + L+ SASA+
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA 1157
>05_02_0121 - 6834843-6835127
Length = 94
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 28 IEADAEKLKKVITELNGKDVEQLIAAGREK 117
+EADA + K V+ L GKD A+ E+
Sbjct: 17 VEADAAEFKSVVQSLTGKDSTAATASPEEE 46
>05_02_0160 -
7194699-7195019,7195207-7195368,7195806-7195953,
7196286-7196362,7196717-7196787,7196891-7196977,
7197662-7198201,7198430-7198439
Length = 471
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 357 IFHRNTLAIMLLLKHKLE*RPAPRTFVKFSQXDRTHV 247
I HR+ A +LL K E + A KF+ + THV
Sbjct: 217 IIHRDIKASNILLDFKFESKVADFGLAKFTSDNNTHV 253
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 16 SSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPV 135
+ VG D+EKL+ ELN + +E L+A K+ +PV
Sbjct: 426 TGVGNIDDSEKLRP--EELNQQTIEALVAENNLKMEILPV 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,390,796
Number of Sequences: 37544
Number of extensions: 81758
Number of successful extensions: 233
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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