Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30413.Seq
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   5e-10
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)                27   7.7  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 26/47 (55%), Positives = 39/47 (82%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           ++ IL SVGIE+D E+L KVI+EL+GK V+++I AG+ KL+++P GG
Sbjct: 672 IKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATVPTGG 718


>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 107 PAAISCSTSLPLSSVITFLSFSASASIPTELRIF 6
           P A   ++SLPL  +IT   +S   ++   + +F
Sbjct: 777 PTAAEAASSLPLMKIITITGYSVGGAVLVTIAVF 810


>SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)
          Length = 252

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 31  EADAEKLKKVITELNGKDVEQLIAAGRE 114
           + D+EK  K+ T L+ K++E LIA  +E
Sbjct: 209 DEDSEKYIKIFTFLSQKEIETLIAEHKE 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,238,318
Number of Sequences: 59808
Number of extensions: 84458
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)