Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30413.Seq
         (464 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal pr...    74   1e-13
X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein prot...    74   1e-13
AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p pro...    74   1e-13
AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB...    74   1e-13
AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA...    74   1e-13
AE014297-3702|AAF56388.3|  977|Drosophila melanogaster CG11819-P...    29   3.1  
AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p pro...    28   5.4  
AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA...    28   5.4  

>X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal
           protein protein.
          Length = 113

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
           +EKILSSVG+E DAE+L KVI EL GK ++ LI  GREKLSSMPVGGG
Sbjct: 23  LEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVGGG 70


>X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein
           protein.
          Length = 113

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
           +EKILSSVG+E DAE+L KVI EL GK ++ LI  GREKLSSMPVGGG
Sbjct: 23  LEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVGGG 70


>AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p
           protein.
          Length = 113

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
           +EKILSSVG+E DAE+L KVI EL GK ++ LI  GREKLSSMPVGGG
Sbjct: 23  LEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVGGG 70


>AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB,
           isoform B protein.
          Length = 113

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
           +EKILSSVG+E DAE+L KVI EL GK ++ LI  GREKLSSMPVGGG
Sbjct: 23  LEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVGGG 70


>AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA,
           isoform A protein.
          Length = 113

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
           +EKILSSVG+E DAE+L KVI EL GK ++ LI  GREKLSSMPVGGG
Sbjct: 23  LEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKLSSMPVGGG 70


>AE014297-3702|AAF56388.3|  977|Drosophila melanogaster CG11819-PA
           protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKV-ITELNGKDVEQLIAAGREKLSSMPVGG 141
           V KIL   G++  ++ +K++ +T  +GK   +LI      L S+PV G
Sbjct: 247 VNKILDVKGVKGLSKLMKEIAVTASSGKHDNELIGRAAITLKSIPVSG 294


>AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p
           protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 412 KNXQKXXMGTXWKANPF 462
           K+ +K  +GT WKANPF
Sbjct: 25  KDYKKAHLGTRWKANPF 41


>AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA
           protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 412 KNXQKXXMGTXWKANPF 462
           K+ +K  +GT WKANPF
Sbjct: 25  KDYKKAHLGTRWKANPF 41


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,993
Number of Sequences: 53049
Number of extensions: 129339
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)