Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30413.Seq
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    46   1e-05
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   6.6  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 31/85 (36%), Positives = 39/85 (45%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXX 180
           ++ ILS+VG++ADAE  K V++ L GK VE+LIA G   L S  V GG            
Sbjct: 23  LKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVS--VSGGAAPAAAAAPAAG 80

Query: 181 XXXXXXXXXXXXXXXXXSESDDXMG 255
                             ESDD MG
Sbjct: 81  GAAPAADSKPAKKEEPKEESDDDMG 105


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           V K+L + G++ D E    V+  L GK + ++IA G+ KLSS+P GG
Sbjct: 23  VLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVPSGG 69


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 19  SVGIEADAEKLKKVITELNGK---DVEQLI 99
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 19  SVGIEADAEKLKKVITELNGK---DVEQLI 99
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 19  SVGIEADAEKLKKVITELNGK---DVEQLI 99
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,023,402
Number of Sequences: 27780
Number of extensions: 65858
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)