Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30412.Seq
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    58   7e-10
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    57   1e-09
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.5  
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    27   1.5  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   4.5  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   5.9  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   5.9  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   7.9  

>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 58.0 bits (134), Expect = 7e-10
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGS-TAQRSLMVSLR 345
           +RF+G   MP IGYG+NKKTR+ +PNG +      +   +       +  A+ +  VS R
Sbjct: 41  RRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSAR 100

Query: 346 RSGS*FVERAQQLSIRVTNAAARLRSQE 429
           +     VE+A+ L ++VTNA A++RSQE
Sbjct: 101 KRVE-IVEKARALGVKVTNAGAKVRSQE 127



 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = +2

Query: 65  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VR
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVR 40


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGS-TAQRSLMVSLR 345
           +RF+G   MP IGYG+NKKTR+ +PNG +      +   +       +  A+ +  VS R
Sbjct: 41  RRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSAR 100

Query: 346 RSGS*FVERAQQLSIRVTNAAARLRSQE 429
           +     VE+A+ L ++VTNA A++RSQE
Sbjct: 101 KRVE-IVEKARALGVKVTNAGAKVRSQE 127



 Score = 54.8 bits (126), Expect = 6e-09
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +2

Query: 65  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VR
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVR 40



 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSPA 380
           P  +   LV NV ++E+L+M N+ Y AEIA  VS++KR  I  K+ A
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARA 111


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 139 TPIPLKFV--IAIRLMPDKSLRP 77
           TP+P+KFV  IA+  MP  +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 405 RIRHSDAELLGSFHESASAS---SKRHHERSLRSTSCFASSRFPAL*H 271
           R+   D EL   F E    +   S   HER +R    + S+RFP L H
Sbjct: 424 RLLELDRELSNFFKELIEVNIPTSNTMHERHIRLLVSYLSNRFPILLH 471


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 13  VSKRNIQDGYKTCLQADNRQKEDEEIYQASIG 108
           +SKR+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 66  ISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 446 NYIY-SFSWERRRAAAFVTLMLSCWALSTNQLPLLRRDTMSDLCAVLPVLHHQDFQL 279
           N++Y  F+W+ + AA +     S    S  QLP L  +  + L     V++ QDF++
Sbjct: 217 NFVYVMFTWDNKAAALYQAFFRSGLTSSQIQLPNL-WNFFATLLVFGVVIYLQDFRV 272


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 25  NIQDGYKTCLQADNRQKEDEEIYQASIGS 111
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 25  NIQDGYKTCLQADNRQKEDEEIYQASIGS 111
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +2

Query: 5   TVAFLKETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSGSRV 184
           ++  L     +AIR   R    K +T+RFI     R    +  + +   I+N  ++G  V
Sbjct: 246 SIIMLITVQALAIRKFIRTYRTKSKTRRFIEDLPSRTISREGFYSEEEEIENSTQNGELV 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,366
Number of Sequences: 5004
Number of extensions: 37493
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)