Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30412.Seq
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 66 1e-11
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 66 2e-11
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 63 1e-10
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 58 3e-09
04_01_0410 - 5411135-5411581 29 1.9
07_03_1151 + 24385272-24386543 28 4.5
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 27 5.9
01_01_0063 + 508387-509112 27 5.9
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 66.5 bits (155), Expect = 1e-11
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGS-TAQRSLMVSLR 345
++FKG LMPNIGYGS+KKTRH LPN F++ + + + A+ + VS +
Sbjct: 112 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTK 171
Query: 346 RSGS*FVERAQQLSIRVTNAAARLRSQENE 435
+ VERA QL I VTN ARLRSQE+E
Sbjct: 172 KRKE-IVERAAQLDIVVTNKLARLRSQEDE 200
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 362
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 176
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 127
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 131 NWRKPRGIDNRVR 169
+WR+P+GID+RVR
Sbjct: 99 SWRRPKGIDSRVR 111
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 65.7 bits (153), Expect = 2e-11
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGS-TAQRSLMVSLR 345
++FKG LMPNIGYGS+KKTRH LPN F++ + + A+ + VS +
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTK 104
Query: 346 RSGS*FVERAQQLSIRVTNAAARLRSQENE 435
+ VERA QL I VTN ARLRSQE+E
Sbjct: 105 KRKE-IVERAAQLDIVVTNKLARLRSQEDE 133
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 362
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEI 109
Score = 54.0 bits (124), Expect = 6e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/43 (67%), Positives = 32/43 (74%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 362
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 109
Score = 54.0 bits (124), Expect = 6e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
++FKG LMPNIGYGS+KKTRH LPN F++
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKK 74
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +2
Query: 23 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 366
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
++FKG LMPNIGYGS+KKTRH LPN F++
Sbjct: 367 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKK 396
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNR 308
Y P K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>04_01_0410 - 5411135-5411581
Length = 148
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 VHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSP-AAQHQSDECGRSPPLP 425
+HN E E M +NR + + + +KK + K P +AQ C + P P
Sbjct: 81 MHNFLEKETTMPRNRYWRTSVKSPIPAKKSEQPAQKKPSSAQKSKKVCRKKPKTP 135
>07_03_1151 + 24385272-24386543
Length = 423
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 362 SWKEPSSSASE*RMRPLASAPRRMNKYNC 448
S+ P+S +S+ + +P A+AP + +Y C
Sbjct: 268 SYHSPNSISSKKKQQPRAAAPAKRTRYEC 296
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 144 LEVLTTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKV 260
L ++ S A QGS + A +WL +Q ++ P KV
Sbjct: 971 LMLVLAVSVAWQGSTMAADYWLAYQTSGDAFRPALFIKV 1009
>01_01_0063 + 508387-509112
Length = 241
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 111 AMTNLRGIGVNLEV---LTTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKVLVHNVKE 281
A LRGI LE+ + + + + D +H+ Q D ++AP P+ L +K
Sbjct: 85 AAARLRGIKTTLELVKLIKADDVTLTLATDDLEHYALKQPGDATFAPAPSPEELDEAMKH 144
Query: 282 LEILMMQNRKYCAEI 326
E + CA +
Sbjct: 145 AEAAQEHVLRCCARV 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,586
Number of Sequences: 37544
Number of extensions: 254066
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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