Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30412.Seq
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 9e-18
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 3.4
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 28 3.4
SB_26839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4) 27 7.9
SB_41496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035) 27 7.9
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20) 27 7.9
SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 86.6 bits (205), Expect = 9e-18
Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGS-TAQRSLMVSLR 345
+RFKGQYLMPNIGYGSNKKTR ++P+GF++ +K + S A+ + VS R
Sbjct: 45 RRFKGQYLMPNIGYGSNKKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSR 104
Query: 346 RSGS*FVERAQQLSIRVTNAAARLRSQENE 435
+ + VERAQQLSI+VTN+ ARLRS+ENE
Sbjct: 105 KRKA-IVERAQQLSIKVTNSNARLRSEENE 133
Score = 69.7 bits (163), Expect = 1e-12
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2
Query: 41 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
+ PV RP I+KKR K+FIRHQSDRY ++ +WRKP+GIDNRVR
Sbjct: 2 VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVR 44
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 362
P K +VHNVKELE+LMM NR Y AEIAH VSS+KRK I
Sbjct: 69 PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAI 109
>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 839
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 LRFQQEDPSYAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLIR 365
L+ Q+ PS P+ +++V ++E E+ RK+C EIA+ V S R++++
Sbjct: 272 LKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIVQ 325
>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 758
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/90 (24%), Positives = 43/90 (47%)
Frame = +3
Query: 144 LEVLTTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKVLVHNVKELEILMMQNRKYCAE 323
+E L E+ ++G++ + +++Q+E PK K + ++ELE ++
Sbjct: 586 IEALRHENKVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELETILKD------- 638
Query: 324 IAHGVSSKKRKLIRGKSPAAQHQSDECGRS 413
H K+++ I K A QH++ E RS
Sbjct: 639 -VH----KEKRNIEKKYLAFQHENRELSRS 663
>SB_26839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 71 KKRTKRFIRHQSDRYDKLKRN--WRKPRGIDNRVRSGSR 181
K K+F++H+ D +L RN WR G N GSR
Sbjct: 50 KGEWKQFVKHKVDEILQLTRNGEWRHCSGEQNPADIGSR 88
>SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4)
Length = 551
Score = 27.1 bits (57), Expect = 7.9
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Frame = +3
Query: 54 TGRQSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAVQGS-ILDA---QHWLRFQQ 221
+GRQ KR R ++ + + I NL+ L + A+QG+ D+ Q L +
Sbjct: 78 SGRQGMKRMRPKVTLHDFFKRSKTENIEKNLQFLARQGIAIQGAKETDSNFHQCLLLRAK 137
Query: 222 EDPS---YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 362
+DPS + K K H+V+ E+L + +++ ++A+ + ++ L+
Sbjct: 138 DDPSILQWMSKKTDKYTSHDVQN-ELLDIMSQQVIRDVANRIKTECYSLL 186
>SB_41496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 71 KKRTKRFIRHQSDRYDKLKRN--WRKPRGIDNRVRSGSR 181
K K+F++H+ D +L RN WR G N GSR
Sbjct: 50 KGEWKQFVKHKVDEILQLTRNGEWRHCSGEQNPADIGSR 88
>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
Length = 124
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 360 SASASSKRHHERSLRSTSCFASSRFPAL*HCEL 262
S + +R +RS + ++C AS R P+ CEL
Sbjct: 21 STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53
>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
Length = 1074
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 71 KKRTKRFIRHQSDRYDKLKRN--WRKPRGIDNRVRSGSR 181
K K+F++H+ D +L RN WR G N GSR
Sbjct: 456 KGEWKQFVKHRVDEILQLTRNGEWRHCSGEQNPADIGSR 494
>SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -1
Query: 399 RHSDAELLGSFHESASASSKRHH---ERSLRSTSCFASSRFP 283
+H+ AEL GS +++ASA+ K H E R T S +P
Sbjct: 320 QHAVAELRGSVYKAASATIKEEHCDAEEGYRKTPGTTGSWWP 361
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,106,210
Number of Sequences: 59808
Number of extensions: 277855
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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