Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30412.Seq
         (477 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   2.4  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   4.1  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    23   5.5  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    22   9.6  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    22   9.6  
AY659930-1|AAT51798.2|  144|Anopheles gambiae lysozyme c-3 protein.    22   9.6  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 228 PSYAPKWIPKVLVHN-VKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKS 374
           P  A    P  L+ N  K LEIL++       E  HG+S ++    +G+S
Sbjct: 464 PDDASALRPLALIDNFAKILEILILNRLVVYTEGEHGLSDRQFGFRKGRS 513


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 253  GIHLGAYDGSSCWNRNQC-WASS 188
            G +LGA   ++CWN  +  W SS
Sbjct: 2749 GAYLGAASANNCWNPLKWDWRSS 2771


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 194 CPTLVTVPTRRPVICSQMD 250
           CP  + +P+RR   C Q D
Sbjct: 420 CPVRINIPSRRCYRCWQTD 438


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS 291
           KGQ+  PN G+ +N           RR  F M+ ++ S
Sbjct: 359 KGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFAS 396


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS 291
           KGQ+  PN G+ +N           RR  F M+ ++ S
Sbjct: 359 KGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFAS 396


>AY659930-1|AAT51798.2|  144|Anopheles gambiae lysozyme c-3 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 198 QHWLRFQQEDPSYAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 350
           Q W+   Q +  Y    + K   +  K+  I  + N  +CAE   G +  K
Sbjct: 41  QDWICLIQNESRYDTSALNKKNWNGSKDYGIFQINNYYWCAEGKVGANECK 91


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,230
Number of Sequences: 2352
Number of extensions: 9400
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 42095889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)