Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30412.Seq
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    57   6e-09
Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   4.0  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    27   7.0  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     27   7.0  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     27   7.0  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 32/89 (35%), Positives = 52/89 (58%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGSTAQRSLMVSLRR 348
           +RF+G   MP IG+GS+++TR +LPNG+++     +K       ++             +
Sbjct: 46  RRFRGMRAMPTIGHGSDRRTRFVLPNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAK 105

Query: 349 SGS*FVERAQQLSIRVTNAAARLRSQENE 435
           S    VERA QL+I++TN  ARLR++E+E
Sbjct: 106 SRKGIVERAAQLNIKLTNGNARLRTEESE 134



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +2

Query: 65  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSGSRVNT*CPTL 205
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVR   R     PT+
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTI 57



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 356
           P    KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK
Sbjct: 70  PNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRK 108


>Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical
           protein T05D4.2 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 303 NRKYCAEIAHGVSSKKRKLIRGKSPAAQHQSDECGRSPPLPGE 431
           N   C EIA  + S+ R  ++G     ++Q      +PP PGE
Sbjct: 55  NHCQCYEIAVDICSEPRVRVKGLDRCWEYQIQSTVNAPPTPGE 97


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 423 GAEASGRIRHSDAELLGSFHESASASSKRH 334
           G +  G I H     LG FHE A    +RH
Sbjct: 198 GCDVVGIISHEIGHALGIFHEQARPDQERH 227


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 141 NLEVLTTESAAVQGSILDAQHWLRFQQEDPSYAP 242
           N+E+L+  SA  +  +L+ +H+L F  E     P
Sbjct: 248 NIEILSPRSATFEQFVLEGRHYLTFINERSRVEP 281


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 141 NLEVLTTESAAVQGSILDAQHWLRFQQEDPSYAP 242
           N+E+L+  SA  +  +L+ +H+L F  E     P
Sbjct: 190 NIEILSPRSATFEQFVLEGRHYLTFINERSRVEP 223


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 141 NLEVLTTESAAVQGSILDAQHWLRFQQEDPSYAP 242
           N+E+L+  SA  +  +L+ +H+L F  E     P
Sbjct: 372 NIEILSPRSATFEQFVLEGRHYLTFINERSRVEP 405


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 31  QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 135
           QD  K   + D+RQKE  E Y+  IGS+ +  E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,513
Number of Sequences: 27780
Number of extensions: 209913
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)