Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30412.Seq
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    96   1e-22
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   5.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 96.3 bits (229), Expect = 1e-22
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = +2

Query: 35  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVR
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45



 Score = 91.5 bits (217), Expect = 4e-21
 Identities = 50/89 (56%), Positives = 57/89 (64%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS**CKTGSTAQRSLMVSLRR 348
           +RFKGQYLMPNIGYGSNKKTRHMLP GFR+     +K  +    +              +
Sbjct: 46  RRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSK 105

Query: 349 SGS*FVERAQQLSIRVTNAAARLRSQENE 435
                VERAQQLSIRVT A+ARLRSQENE
Sbjct: 106 KRKSIVERAQQLSIRVTYASARLRSQENE 134



 Score = 70.1 bits (164), Expect = 1e-14
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 362
           P    KVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK I
Sbjct: 70  PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSI 110


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 141 NLEVLTTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKV 260
           NL V   +S A+    L     LR+ QE    AP WI  V
Sbjct: 305 NLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTWISSV 344


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 261 GPSESIWEHMTGLLVGTVTN 202
           G SES WE +TG    T  N
Sbjct: 86  GTSESQWEDVTGSTPLTFVN 105


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 302 KQEVLRRDRSWCLFEEAEAD 361
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 156 TTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKVLVHNVKELEIL 293
           TT S A+    L+     + ++E  ++ PK   ++   ++KE+E L
Sbjct: 311 TTMSNALYELALNQDVQKKLREEINTFCPKNNKELKYDDIKEMEYL 356


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 311  LPVLHHQDFQLFNI 270
            LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 311  LPVLHHQDFQLFNI 270
            LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,469
Number of Sequences: 438
Number of extensions: 2544
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)