Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30411.Seq
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   6.5  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 317 HTLKGECRHMLLHHWPFL 264
           HT + +C H LL H P L
Sbjct: 352 HTPEPDCIHELLGHMPLL 369


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 EQRADWLHLAKTRVNTPRKLPQPW 440
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 271 GQWCNSICRHSP 306
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 EQRADWLHLAKTRVNTPRKLPQPW 440
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 271 GQWCNSICRHSP 306
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 EQRADWLHLAKTRVNTPRKLPQPW 440
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 271 GQWCNSICRHSP 306
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 EQRADWLHLAKTRVNTPRKLPQPW 440
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 271 GQWCNSICRHSP 306
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 75  HIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYR 230
           HI R +  S   +   ++   KS+P+RK  E++  +  +K      ++   R
Sbjct: 576 HIMRSITESGGRRRQTREKRKKSLPVRKLLELERAQHEFKNGDSSSLLDKMR 627


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +3

Query: 192 KGQQVGKVMQVYRKKFVVYIEGFKEKRP 275
           +G +V K+ ++Y +    Y++  ++ +P
Sbjct: 473 EGWKVEKIQEIYLEALRAYVDNRRKPKP 500


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 343 FIHLQLDNHTL*RVNADICCCTIGLFSLN 257
           F   +L+N++L  +N  +    +GL+ LN
Sbjct: 316 FCKKKLENYSLQLINHRVVFTAMGLYVLN 344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,244
Number of Sequences: 336
Number of extensions: 2394
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)