Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30411.Seq
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 118 2e-27
12_01_0323 - 2459854-2460306 118 3e-27
11_01_0317 - 2365493-2365786,2365825-2365953 81 5e-16
08_01_0391 + 3443989-3444219 29 1.7
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503 29 2.9
12_01_0495 - 3935395-3937110 28 5.1
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 28 5.1
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 27 6.8
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 27 6.8
12_01_0232 - 1746434-1746516,1747170-1747264,1747331-1747434,174... 27 8.9
11_01_0235 - 1807448-1807709,1807818-1807921,1809133-1809228,180... 27 8.9
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 27 8.9
04_03_0232 - 13049649-13052807 27 8.9
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 8.9
>01_01_0263 + 2136858-2137331
Length = 157
Score = 118 bits (285), Expect = 2e-27
Identities = 56/83 (67%), Positives = 72/83 (86%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N +VTSSRRK RK HF+APS + RVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
YKG++ GKV+QVYR+++V+++E
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVE 82
Score = 72.1 bits (169), Expect = 2e-13
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 415
I REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR A K KGK+
Sbjct: 84 ITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 118 bits (284), Expect = 3e-27
Identities = 56/83 (67%), Positives = 72/83 (86%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N +VTSSRRK RK HF+APS + RVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
YKG++ GKV+QVYR+++V+++E
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVE 82
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 415
I REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+
Sbjct: 84 ITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 81.0 bits (191), Expect = 5e-16
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N +VTSSRRK RK HF+APS + RVLMS+ LS ELR K+N VVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG 47
Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
YKG++ GKV+QVYR+++V+++E
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVE 69
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 415
I REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+
Sbjct: 71 ITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121
>08_01_0391 + 3443989-3444219
Length = 76
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 304 VNADICCCTIGLFSLNPSMYTTNFLRYTCITLPTCWPL 191
++AD+CCC+ L + ++ + L + C+ L TC+ L
Sbjct: 41 MDADLCCCSCALIGIAATV-AASLLAFKCL-LTTCYKL 76
>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
Length = 685
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 266 LFESLNVYNKLFTIHLHHFANL 201
LF L++YN L IH+HH +L
Sbjct: 7 LFTQLHLYNLLLLIHVHHATSL 28
>12_01_0495 - 3935395-3937110
Length = 571
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 250 LRDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQ 399
LR R G WCN C + F +C + + R N R++ G W+
Sbjct: 78 LRRRHRPGYWCN--CVYKWFFLCHRKRQSSRRTTGNKRAERVVAAGGRWK 125
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Frame = +3
Query: 9 KFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 170
+F + ++S++ ++F I + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 171 QVVRGHYKGQQVGKVMQVYRKKFVVYIEGFKEK 269
QV+ G KG +VG+V ++++ V ++ K
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVKDLNLK 133
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 292 CRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNXHSH 438
C H+ K C C + E + Q+ R + Q ++ I R HS+
Sbjct: 479 CNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRSAVHSN 527
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 290 MLLHHWPFLFESLNVYNKLFT 228
M L WPFLFE +N N +F+
Sbjct: 88 MWLSLWPFLFEKINKTNVVFS 108
>12_01_0232 -
1746434-1746516,1747170-1747264,1747331-1747434,
1748677-1748772,1748860-1748919
Length = 145
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 135 VKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIEG 257
++ I + D V ++RG KG+ G + +V R + V +EG
Sbjct: 10 IRHWKILRGDNVMIIRGKDKGES-GLIKRVIRSQNRVIVEG 49
>11_01_0235 -
1807448-1807709,1807818-1807921,1809133-1809228,
1809323-1809382
Length = 173
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 135 VKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIEG 257
++ I + D V ++RG KG+ G + +V R + V +EG
Sbjct: 10 IRHWKILRGDNVMIIRGKDKGES-GLIKRVIRSQNRVIVEG 49
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 331 QLDNHTL*RVNADICCCTIGLFSLNPSMYTTNFLRYTCITLPTC 200
Q D H +N + + + + +Y+T FLR + LPTC
Sbjct: 20 QADQHEALLMNMKLTFMVVLMALMGSIIYSTGFLRLSFRRLPTC 63
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 380 CPLLCDRGLLCGLYSSST*QSHTLKGECRHMLLHHWPFLFESLNVYNKLFTIHLHHFANL 201
CP L LC S+ TL+ C L +P +S V+ +L IHLH L
Sbjct: 910 CPRLVHVLPLCSSNSNGCRSLKTLEIVCCGALKDVFPLDSDSTIVFRRLKRIHLHELPKL 969
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 114 ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYI 251
E KF + P K D +Q+V + + QQ + V K+F +YI
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYI 1323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,026
Number of Sequences: 37544
Number of extensions: 256691
Number of successful extensions: 645
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -