Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30411.Seq
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 4e-32
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.7
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 3.0
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2) 28 5.3
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 6.9
SB_55015| Best HMM Match : DUF457 (HMM E-Value=9.6) 27 9.2
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37) 27 9.2
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 27 9.2
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 134 bits (324), Expect = 4e-32
Identities = 60/89 (67%), Positives = 78/89 (87%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N +V+SSRRK+RK HFSAPS + R LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60
Query: 186 HYKGQQVGKVMQVYRKKFVVYIEGFKEKR 272
H+K QQVGKV+QVYRKK+V++I+ + ++
Sbjct: 61 HFKSQQVGKVIQVYRKKWVIHIDRIQREK 89
Score = 70.5 bits (165), Expect = 8e-13
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 400
IQREKANGAT VGIHPSK IVKLK++KDRK ILDR+ + +LA GK
Sbjct: 85 IQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 277 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNXHSHG 441
W N IC ++C C+V DE N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMP--IRK 158
MK + Q+ RK+ K H P HI + S + K +R+ N + P IRK
Sbjct: 1 MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 445 GLHGCGSFLGVFTLVFAKCSQS 380
GLH CG + VFAKC Q+
Sbjct: 74 GLHPCGDLVPTMLKVFAKCDQA 95
>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
Length = 606
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 12 FNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDD 164
F+ S +K+ +R+F +HI + + +S SK+ ++ K + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174
>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 409 TLVFAKCSQSALCSAIEDCFAVFI 338
T+ + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 368 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWPFLF 261
C G + + ST + L+G+ CR M+L HWP F
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWF 361
>SB_55015| Best HMM Match : DUF457 (HMM E-Value=9.6)
Length = 140
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 290 MLLHHWPFLFESLNVYNKLFTIH 222
+LLHHW F +SL V+ F +H
Sbjct: 94 LLLHHWEFSSQSLTVFG--FDLH 114
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 105 LSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 233
+ K LR+ K+MP R+D+++Q V YK ++VG+ + R+
Sbjct: 150 MEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194
>SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
Length = 367
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 275 WPFLFESLNVYNKLFTIHLHHFANLLAFVVSTY 177
WP E N+Y K +TI L F LL V+ TY
Sbjct: 188 WPDYREG-NIYMKAYTIGLAIFWYLLPLVIITY 219
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 290 MLLHHWPFLFESLNVYNKLFTIH 222
+LLHHW F +SL V+ F +H
Sbjct: 153 LLLHHWEFSSQSLTVFG--FDLH 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,597,247
Number of Sequences: 59808
Number of extensions: 320686
Number of successful extensions: 920
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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