Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30411.Seq
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical p... 97 9e-21
Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical pr... 97 9e-21
Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical pr... 97 9e-21
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z50741-2|CAA90610.1| 383|Caenorhabditis elegans Hypothetical pr... 27 6.0
U23513-3|AAB36862.1| 209|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL031637-1|CAA21047.2| 317|Caenorhabditis elegans Hypothetical ... 27 8.0
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 27 8.0
>Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical
protein F28C6.7c protein.
Length = 109
Score = 96.7 bits (230), Expect = 9e-21
Identities = 45/83 (54%), Positives = 63/83 (75%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N V+S K+RK HF+APSH R +MS+PL+KELR K ++++PIR DDEV V+RG
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60
Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
+KG G+V++ YRKKFV++I+
Sbjct: 61 RHKG-NTGRVLRCYRKKFVIHID 82
Score = 35.9 bits (79), Expect = 0.017
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSK 313
I REKANG+T ++GIHPSK
Sbjct: 84 ITREKANGSTVHIGIHPSK 102
>Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical
protein F28C6.7b protein.
Length = 106
Score = 96.7 bits (230), Expect = 9e-21
Identities = 45/83 (54%), Positives = 63/83 (75%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N V+S K+RK HF+APSH R +MS+PL+KELR K ++++PIR DDEV V+RG
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60
Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
+KG G+V++ YRKKFV++I+
Sbjct: 61 RHKG-NTGRVLRCYRKKFVIHID 82
Score = 35.9 bits (79), Expect = 0.017
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSK 313
I REKANG+T ++GIHPSK
Sbjct: 84 ITREKANGSTVHIGIHPSK 102
>Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical
protein F28C6.7a protein.
Length = 142
Score = 96.7 bits (230), Expect = 9e-21
Identities = 45/83 (54%), Positives = 63/83 (75%)
Frame = +3
Query: 6 MKFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
MK N V+S K+RK HF+APSH R +MS+PL+KELR K ++++PIR DDEV V+RG
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60
Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
+KG G+V++ YRKKFV++I+
Sbjct: 61 RHKG-NTGRVLRCYRKKFVIHID 82
Score = 68.5 bits (160), Expect = 3e-12
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +2
Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 415
I REKANG+T ++GIHPSK I KLK++KDR+A+++R+A GR G KGK+
Sbjct: 84 ITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136
>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
protein E03G2.2 protein.
Length = 1503
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 287 LLHHWPFLFESLNVYNKLFTIHLHHFANLLAFVVST 180
LL W LFE NV LF I H LLA +++T
Sbjct: 74 LLAVWESLFEHKNVTADLFIIPFFHSFTLLALLIAT 109
>Z50741-2|CAA90610.1| 383|Caenorhabditis elegans Hypothetical
protein F55G7.2 protein.
Length = 383
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 9 KFNKQVTSSRRKNRKRHFSAPSHIXRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 188
KFN+ V RR N K+ P H + + +++++ + S+P K + H
Sbjct: 94 KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148
Query: 189 YKG 197
YKG
Sbjct: 149 YKG 151
>U23513-3|AAB36862.1| 209|Caenorhabditis elegans Hypothetical
protein D2021.8 protein.
Length = 209
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -1
Query: 206 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 102
NLL A VV ++NL+ ++ A +HG ++E + L+QG
Sbjct: 11 NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46
>AL031637-1|CAA21047.2| 317|Caenorhabditis elegans Hypothetical
protein Y47H9B.2 protein.
Length = 317
Score = 27.1 bits (57), Expect = 8.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -1
Query: 449 KRPPWLWXFPRCIYPCLCQVQPVC 378
++ PW + +YP LC++ +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 485 FKNFIYLKNYLXKRPPWLWXFPRCI 411
F NF++LKN+L + F +CI
Sbjct: 79 FSNFLFLKNFLIPKTSRFCRFKKCI 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,358
Number of Sequences: 27780
Number of extensions: 234005
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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