Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30411.Seq
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 IHPSKCVIVKLKMNKDRKAILD 364
           +HPS+C   K+   +  K +LD
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLD 37


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 IHPSKCVIVKLKMNKDRKAILD 364
           +HPS+C   K+   +  K +LD
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLD 37


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 317 HTLKGECRHMLLHHWPFL 264
           HT + +C H LL H P L
Sbjct: 330 HTPEPDCIHELLGHMPLL 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 280 CNSICRHSPFKVCDCQV 330
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 179 YNLNFIVFANRHGFYI 132
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,372
Number of Sequences: 438
Number of extensions: 2602
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)