Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30410.Seq
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   131   9e-32
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   131   9e-32
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    29   0.57 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.75 
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    27   3.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.3  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   5.3  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   5.3  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   7.0  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   7.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   7.0  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  131 bits (316), Expect = 9e-32
 Identities = 57/86 (66%), Positives = 78/86 (90%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51  KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110

Query: 432 GIAKIMRNRSMARYLSGSVKEILGTA 509
            +A+ MR +S+A+ LSG+VKEILGTA
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTA 136



 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 39/51 (76%), Positives = 45/51 (88%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSGVLTIDE 592
           SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 138 SVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  131 bits (316), Expect = 9e-32
 Identities = 57/86 (66%), Positives = 78/86 (90%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51  KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110

Query: 432 GIAKIMRNRSMARYLSGSVKEILGTA 509
            +A+ MR +S+A+ LSG+VKEILGTA
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTA 136



 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 39/51 (76%), Positives = 45/51 (88%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSGVLTIDE 592
           SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 138 SVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 19/85 (22%), Positives = 36/85 (42%)
 Frame = +3

Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 449
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 450 RNRSMARYLSGSVKEILGTASQLDV 524
           RNR     L  +V  I     ++D+
Sbjct: 83  RNRKARENLKVNVSSIGEVLPEIDL 107


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 505  VPRISFTEPERYRAIDLFLMIFAMPI-TSSREMLPL 401
            V R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 503 HSQSVGCTVEGRPP 544
           H +SVGC VEG PP
Sbjct: 17  HCKSVGCIVEGCPP 30


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 404 RQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 496
           + H+  +C  HC  H  +   PVP   +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +2

Query: 398 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD--SW-HSQSVGC 523
           T+  H P +   HC  H  +   PVP   +K D   W H +   C
Sbjct: 216 TKPDHKPWKHEEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCSC 260



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 398 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 496
           T+  H P +   HC  H  + + PVP   +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 276
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 342 IIRALKEPPRD-RKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAS 512
           I+R +KE  +  RK +K +    G+IS  DVI    ++   +   YL    KE+LG AS
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEAS 112


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 511 LAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 389
           L+ PR   T  +R   + + +     P TSSR  LPL +++
Sbjct: 221 LSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 269  ETLPVLVALAMSSPTFLGDRPRGPILGAKDDVAP 168
            E +PV  ++   SP  L D  R  +L    ++AP
Sbjct: 1017 ELIPVFASVLTGSPEQLNDELRSELLSMVKEIAP 1050


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 601 KHLFINGQNSAVDVINKIMWRPALHSTS 518
           K ++++ +  A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 182 DDVAPTSPPTHRKFTILI 129
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,788
Number of Sequences: 5004
Number of extensions: 54975
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)