Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30409.Seq
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 124 7e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 124 7e-29
07_03_0574 - 19629875-19631032 31 1.6
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 30 2.8
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 3.7
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 29 3.7
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054... 29 4.9
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.4
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.4
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 8.5
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 124 bits (300), Expect = 7e-29
Identities = 65/121 (53%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCWAREVLRLRG-VL 609
HQPI E++ NIP IA C+TDSP+R + A + AR VL++RG +L
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTIL 194
Query: 610 P 612
P
Sbjct: 195 P 195
Score = 92.3 bits (219), Expect = 5e-19
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 245 IENP 256
IENP
Sbjct: 72 IENP 75
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 124 bits (300), Expect = 7e-29
Identities = 65/121 (53%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCWAREVLRLRG-VL 609
HQPI E++ NIP IA C+TDSP+R + A + AR VL++RG +L
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTIL 194
Query: 610 P 612
P
Sbjct: 195 P 195
Score = 95.5 bits (227), Expect = 5e-20
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +2
Query: 32 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 211
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 212 KLVLAARAVVAIENP 256
KL LAAR +VAIENP
Sbjct: 61 KLQLAARVIVAIENP 75
>07_03_0574 - 19629875-19631032
Length = 385
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 693 PRXRLWXQLNQK*LAPGXMK--TWNEHWSQXASWGLKITGPXLLQPGCSSWLFG 848
PR +W PG T + W + W L G L PGC+ W FG
Sbjct: 212 PRRGVWTTPKGAGAGPGTYSFDTERQAWRREGDWELPFAGKAELVPGCNLW-FG 264
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 208 GKTCSGCSCCRSHREPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 384
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 385 AFREPRLLIVLD 420
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 29.5 bits (63), Expect = 3.7
Identities = 28/84 (33%), Positives = 38/84 (45%)
Frame = -1
Query: 629 PSAGSRGSTPRSLSTSRAQQPPHQTNRVGRLGVAWDSNVHNLSGESVLHKAITGMLTYEA 450
PS+ ST S S S + G AW SN ++ SG S + I G+ +
Sbjct: 385 PSSTGTSSTAESNSGSATSVTGANS---GSYSSAW-SNSNSNSG-STMPSGI-GVASNAG 438
Query: 449 SVMG*WSCAGSNTIKRRGSRNAAW 378
S G WS AGSNT G+ ++ W
Sbjct: 439 SSSGSWSNAGSNTGTLSGAGSSNW 462
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -2
Query: 646 KSTTTSPALVHGEAHHEASALHVPNNHHIKPIEWEDLVLHGIAMSTILVGSLCCTKQ 476
++ TSPA G A +A+A+ VP+NH IE+E + + GI + S C +Q
Sbjct: 141 RAAATSPAGRRGGAVRDAAAVIVPDNHR-SDIEFE-IAVFGIGIMLQQQRSACEEQQ 195
>05_03_0525 +
15002846-15003048,15004814-15004937,15005458-15005481,
15005995-15006779,15006839-15006873,15007108-15007601,
15007951-15008452,15008725-15008867,15009523-15009576,
15010255-15010362,15010529-15010705,15011169-15011186,
15011561-15011938,15012125-15012310,15012356-15013205,
15013362-15013402,15013491-15013868,15014195-15014236,
15014528-15014678,15015621-15015670
Length = 1580
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -2
Query: 625 ALVHGEAHHEASALHVPNNHHIKPIEWEDLVLHGIAMSTILVG-SLCCTKQSQEC*HMKL 449
AL G+ +E + L P + I P +E + + I+ ++ + S K++ E +KL
Sbjct: 311 ALYGGKNPYELTGLGDPRDKFIAPSLFEGVNISSISSTSSGMNLSTNSAKENNEYNQLKL 370
Query: 448 Q*WVDGLVQGPIQS 407
Q +DG +G I+S
Sbjct: 371 QKQIDGYQRGSIKS 384
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 132 TFSAPRWVVAASILVTSSSLRASTSNP 52
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 309 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 416
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 319 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 492
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 493 DSPLRL 510
+ P+++
Sbjct: 330 EQPMQI 335
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 139 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 246
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,574,110
Number of Sequences: 37544
Number of extensions: 606728
Number of successful extensions: 1601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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