Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30409.Seq
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   8.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 594 PQHFTCPTTTTSNQ*SGKTWCCMG 523
           P+   CP    ++  + KT+CC G
Sbjct: 438 PEEILCPHFNVTDGETTKTFCCKG 461


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 649 NKSTTTSPALVHGEAHHEASALHVPNNHH 563
           + S + SP+L+  + H + +     NNHH
Sbjct: 39  SSSRSPSPSLLTSQPHQDHNKEKSKNNHH 67


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 412 VLDPAQDHQPITEASYVNIPVIALCNTDSP 501
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 184 CDQLASYLGKTCSGCSCCRSHREPADVFVISSRPFGQRAV 303
           CD      G  CS  S   S  +  + FV  S+ F +R++
Sbjct: 7   CDLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSI 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,015
Number of Sequences: 438
Number of extensions: 5963
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)