Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30409.Seq
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 126 3e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 120 1e-27
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 120 1e-27
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 33 0.25
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 33 0.33
At2g22340.1 68415.m02651 hypothetical protein 33 0.33
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 31 1.0
At1g29220.1 68414.m03574 transcriptional regulator family protei... 30 1.8
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.3
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 4.1
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ... 28 9.4
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 126 bits (303), Expect = 3e-29
Identities = 66/129 (51%), Positives = 82/129 (63%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCWAREVLRLRGVLP 612
HQPI E + NIP+IA C+TDSP+R + A + AR VL++RG +
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI- 193
Query: 613 REPALGMLW 639
A G W
Sbjct: 194 ---AAGQKW 199
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 245 IENP 256
IENP
Sbjct: 72 IENP 75
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 120 bits (290), Expect = 1e-27
Identities = 54/84 (64%), Positives = 64/84 (76%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 433 HQPITEASYVNIPVIALCNTDSPL 504
HQPI E + NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159
Score = 85.0 bits (201), Expect = 6e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 77 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +3
Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLLGT*SAEASWCASP*TSAGDVVVDLF 650
P VDI IP N K HSIG ++WLL + DV+VDLF
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA-AQKWDVMVDLF 207
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 120 bits (290), Expect = 1e-27
Identities = 54/84 (64%), Positives = 64/84 (76%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 433 HQPITEASYVNIPVIALCNTDSPL 504
HQPI E + NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159
Score = 85.0 bits (201), Expect = 6e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 77 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLL 575
P VDI IP N K HSIG ++WLL
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLL 183
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 608 STPRSLSTSRAQQPPHQTNRVGRLGVAWDSNVHNLSGESVL 486
S + S+SR+ + R GR+G WD+NVH + S+L
Sbjct: 88 SREKKQSSSRSLKKGQSFKRSGRIGRCWDANVHRATCSSLL 128
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 397 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPS 540
P ++V D + I EAS + IPV+A+ + + PL + +++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 115 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 234
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 454 SYVNIPVIALCNTDSPLRLWTLLSHATPSLP 546
S+ +IP++A C + ++LWT +S+ SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401
>At1g29220.1 68414.m03574 transcriptional regulator family protein
similar to Transcriptional regulator protein HCNGP
(Swiss-Prot:Q02614) [Mus musculus]
Length = 351
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 632 IPSAGSRGSTPRSLSTSRAQQPPHQTNRVGRLGVAWDSNVHNLSGES 492
+ ++ S TPRSL + +P +G GVA + SGES
Sbjct: 78 VGASSSAHGTPRSLDNDESSRPDWSNRMIGESGVADGERGDDASGES 124
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 352 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 453
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +2
Query: 35 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 214
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 215 LVLAARAVVAIENPLMCSSSHHGPSV 292
L+ AR + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
{Homo sapiens} (GI:4191344)
Length = 668
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 650 EQINHNIPSAGSRGSTPRSLSTSRAQQPPHQ 558
E++ N + G RG+T + L TSR + HQ
Sbjct: 440 EELKRNTFNIGGRGTTLKQLDTSRGDKFEHQ 470
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,598,236
Number of Sequences: 28952
Number of extensions: 458065
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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