Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30407.Seq
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 32 0.10
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 32 0.10
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.23
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.71
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 29 0.71
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 29 1.2
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 28 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.2
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 5.0
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.6
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 6.6
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 8.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 8.7
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 32.3 bits (70), Expect = 0.10
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 118 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG----EPKKATMHLRT 285
E+ + EP E+P S KVE A + AP + A EP KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 286 VMPQKRKRLV 315
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 91 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKAT 270
++D+ +P ++S K SP K+ +K ++A + TDE P D N E T
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 271 MHLRT 285
LRT
Sbjct: 646 SSLRT 650
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 85 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
++A ++K EV T P S V++ P+KK + +E T E +P E PK
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETVTQPKREKTPVEKSFPKP 498
Query: 265 AT 270
A+
Sbjct: 499 AS 500
Score = 29.9 bits (64), Expect = 0.53
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 100 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 240
K+E P E + +P SPV S K E +E K +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 115 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATM 273
PE ++PKES ++ P+K+ E + + +E P E+ K+ T+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETV 481
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE-APEDSPAENGE 255
++ PE+ + + PVKK P+KK + A++N E DE + E+ E+ E
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSE 107
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 29.5 bits (63), Expect = 0.71
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMH 276
D+ A +E + E E + + E E ++ T+E P+++P E + K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 277 LRTVMP 294
V+P
Sbjct: 106 FYDVVP 111
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 136 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKAT-MHLRTVMPQKRK 306
+P +PVKKS K A + N + + S A + PK A+ L P++RK
Sbjct: 195 QPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRK 252
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 118 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
+E + KES K++PA+K + + ENGT+E + PA+ +K
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKRTRKRK 97
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = -1
Query: 287 TVLRCIVAFFGSPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 108
TV+ V S + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 107 SFLSTAASAIV 75
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 ATMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAEN 249
++ D + K + + +S EP + VKK +KK E + S + + E S +E+
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/65 (20%), Positives = 26/65 (40%)
Frame = +1
Query: 112 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMHLRTVM 291
A +++++ + P+++ P + A + + T AP+ E PK V
Sbjct: 142 AAKDLSTPQDSSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVK 201
Query: 292 PQKRK 306
K K
Sbjct: 202 QSKPK 206
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 121 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKAT 270
EV++ EP+ PVK+ V ++ G+ + TD +P E E +T
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPST 434
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 73 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 252
A A A + + +V+ + + +PK++PV S A + A N + T E +
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266
Query: 253 EPKK 264
KK
Sbjct: 267 SKKK 270
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/68 (20%), Positives = 25/68 (36%)
Frame = +1
Query: 106 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMHLRT 285
E+ +T K + E++ES + +DE+ + P T
Sbjct: 517 EIREPSLTKKTAVSMQESKEEGRSDESSESEESGSSSDESDNSEKEDRSNPIPVEKRAST 576
Query: 286 VMPQKRKR 309
V+ K+KR
Sbjct: 577 VLNTKKKR 584
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 103 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 249
++V ++TS EPK + KSP +K + ++ T++ DS +N
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDN 1020
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,026
Number of Sequences: 5004
Number of extensions: 50577
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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