Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30407.Seq
(929 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 34 0.15
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.27
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.36
At2g25670.2 68415.m03077 expressed protein 31 0.82
At2g25670.1 68415.m03076 expressed protein 31 0.82
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 31 1.1
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 31 1.1
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 31 1.1
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 31 1.1
At1g56660.1 68414.m06516 expressed protein 31 1.4
At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar ... 30 1.9
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 30 1.9
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 30 1.9
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 2.5
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 3.3
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 29 3.3
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 3.3
At3g28770.1 68416.m03591 expressed protein 29 3.3
At5g19950.3 68418.m02375 expressed protein 29 4.4
At5g19950.2 68418.m02374 expressed protein 29 4.4
At5g19950.1 68418.m02373 expressed protein 29 4.4
At4g31880.1 68417.m04531 expressed protein 29 4.4
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 4.4
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 4.4
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 29 5.8
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 5.8
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 29 5.8
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 29 5.8
At1g76820.1 68414.m08939 expressed protein 29 5.8
At1g09520.1 68414.m01067 expressed protein 29 5.8
At5g63550.1 68418.m07976 expressed protein 28 7.7
At3g24630.1 68416.m03093 hypothetical protein 28 7.7
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 28 7.7
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 7.7
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 79 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEP 258
M D + PE+ EPK+ + P K+ EA + GK+ G E+ E G+
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDK 121
Query: 259 KK 264
K+
Sbjct: 122 KE 123
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 100 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKA 267
KKE + E+ +S+E + P KK PA K+ + + D++ EDS E KKA
Sbjct: 153 KKESSSEDDSSSE--DEPAKK-PAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKA 205
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 118 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 246
++V + KE VKK P KKVE+++ + E+ +E + PA+
Sbjct: 42 KDVIAAVQKEKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAK 83
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 97 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 246
+K E APE EV S P E +++PA AAE N EN ++E E++P E
Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAEETPDE 116
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +1
Query: 100 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMHL 279
K+ A E +++ K+ K+ K+ + ++N + DEA P E P +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 280 RTVMPQKRKR 309
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +1
Query: 100 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMHL 279
K+ A E +++ K+ K+ K+ + ++N + DEA P E P +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 280 RTVMPQKRKR 309
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 133 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 252
T+PK P + PA++ ++ + + DE+ ED +E G
Sbjct: 53 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKG 92
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES------NGKENGTDEAPEDSPAENGEP 258
D + E+ E +E+P K P K ES +GK+ AP +P + E
Sbjct: 99 DSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEK 158
Query: 259 KKATMHLRTVMPQKR 303
KK H T P K+
Sbjct: 159 KKGG-HTATPHPAKK 172
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 133 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 252
T+PK P + PA++ ++ + + DE+ ED +E G
Sbjct: 136 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKG 175
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES------NGKENGTDEAPEDSPAENGEP 258
D + E+ E +E+P K P K ES +GK+ AP +P + E
Sbjct: 182 DSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEK 241
Query: 259 KKATMHLRTVMPQKR 303
KK H T P K+
Sbjct: 242 KKGG-HTATPHPAKK 255
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 145 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKAT 270
ESP KS KK AAES ++G +E +SPA K+A+
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRAS 116
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +1
Query: 100 KKEVAPEEVTSTEPKESPVKK--SPAKKVEAAESNGKENGTDE-APEDSPAE-NGEPKKA 267
K+E + T P ++K S A K E NG NG E A ED P+ + +P K
Sbjct: 51 KQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPSSVSKDPAKT 110
Query: 268 TMHLRTVMPQKRKRL 312
T P+ K L
Sbjct: 111 TERFAPREPKPPKVL 125
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE-NGEPKK 264
+K E PEE KE + +K E E +GK+N E E E +PKK
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKK 196
>At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar to
variable surface lipoprotein Vsp422-3 (GI:15384285)
[Mycoplasma bovis]; similar to glycine-rich protein
atGRP-6, Arabidopsis thaliana, PIR:T49893
Length = 225
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 118 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMHLRTVMP 294
E+ E ++ P K PA+ + + + G ED P + +P + H+ MP
Sbjct: 150 EDKLPAEEEKPPQKDKPAEGHKPPQKDKPAEGDKPVEEDKPPQKDKPAEGDKHVEEDMP 208
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 85 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
D AV V S+ KE ++ +KK+E AE +EN +E + + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 265 ATMHLRTVMPQK 300
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 85 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
D AV V S+ KE ++ +KK+E AE +EN +E + + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 265 ATMHLRTVMPQK 300
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 109 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 237
V PEE++ ++PK+S A+K+E N KE T E P D+
Sbjct: 302 VNPEEISESKPKQS--VDEVARKIEGFHIN-KEGKTAEKPSDA 341
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 148 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 243
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 124 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
+ + + P KSP K + + ENG PE+ AEN K+
Sbjct: 507 ILAASSSQEPSNKSP-KVISTDTKDASENGVASQPEEKQAENPNAKE 552
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
DKKE EEV S PK KK +K EAA +A ++S AE E KK
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAV---------DAEDESAAEKSEKKK 548
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKK 264
DKKE E+ E + KS K++ E N K+N + EDS ++N E K+
Sbjct: 962 DKKEYVNNELKKQEDNKKETTKSENSKLK--EEN-KDNKEKKESEDSASKNREKKE 1014
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 145 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPK 261
ES VK + +K E++E +G + GT++ + +PA++ +PK
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS-DPK 274
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 145 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPK 261
ES VK + +K E++E +G + GT++ + +PA++ +PK
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS-DPK 274
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 145 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPK 261
ES VK + +K E++E +G + GT++ + +PA++ +PK
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS-DPK 274
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Frame = +1
Query: 88 AAVDKKEVAPEEVTSTEPKESPVKKSPAK-----------KVEAAESNGKENGTDEAPED 234
A+ KKE + TS++ K PVK PAK S KE+ ++ E+
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEE 844
Query: 235 SPAENGEPKKA 267
+P E KA
Sbjct: 845 TPKEPEPATKA 855
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 136 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKATMHLRTVMPQKRKRL 312
EPK+ +E+ +S+ +ENG ED +GE + +KRKRL
Sbjct: 31 EPKKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRL 89
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPEDSPAENGE 255
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E E
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGETQTQTEAE 473
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 79 MADAAVDKKEVAPEEVTSTEPKESPV-KKSPAKKVEAA-ESNG--KENGTDEAPEDSPAE 246
++ A KKE P E K SP ++ PA+K AA E G KE E E +
Sbjct: 89 VSTVAPPKKETPPSS-GGAEKKPSPAAEEKPAEKKPAAVEKPGEKKEEKKKEEGEKKASP 147
Query: 247 NGEPKKATMHLRT 285
PK++T+ L+T
Sbjct: 148 PPPPKESTVVLKT 160
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +1
Query: 100 KKEVAP---EEVTSTEPKESP--VKKSPAKKVEAAE-SNGKENGTDEAPEDSP-AENGEP 258
KKE+ P EE + +P+ESP + SP + + E SN KE + ++SP E +P
Sbjct: 421 KKEINPPNLEEPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPKPESPKQESPKTEQPKP 480
Query: 259 K 261
K
Sbjct: 481 K 481
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 70 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 249
L T + V + EV P EP+E PV +P VE + N T EA S ++N
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVET-----RLNLTVEAASSSSSDN 194
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 97 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED---SPAENGEPKKA 267
++K EE+ E K S KS +K+ E E + K++ E E+ SP+ + PKK+
Sbjct: 20 ERKRREAEELAVREKKISKKHKSKSKEEEKPEKSKKKSKKYEEVEEEEKSPSPSPSPKKS 79
>At1g76820.1 68414.m08939 expressed protein
Length = 266
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 79 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVE--AAESNGKENGTDEA-PED-SPAE 246
+ ++A KK + T ++ + K A+ E AA E D+A PE +P E
Sbjct: 167 LVESARSKKHKKKNKSGRTLQEDDDLDKLLAELGETPAAGKPASEEEKDQAQPEPVAPVE 226
Query: 247 NGEPKKATMHLRTVMPQKRKR 309
N K+ LR + P+KRKR
Sbjct: 227 NTGEKEKRRLLRLLQPRKRKR 247
>At1g09520.1 68414.m01067 expressed protein
Length = 260
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 103 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGEPKKAT 270
KE A + + E E V +K + KE D+ P+ SPA NG K T
Sbjct: 165 KEAALAKKRAREALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKET 220
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 145 ESPVKKSPAKKVEAAESNGKENGTDEAPE-DSPAENGEPKKATMHLRTVMPQKRKRL 312
E P KK + K ES+G + G D+ P A +GE + T P K++++
Sbjct: 334 EKPSKKKSSSKKTVEESSGSK-GKDKQPSAKGSARSGEKSSKQIAKSTSSPAKKQKV 389
>At3g24630.1 68416.m03093 hypothetical protein
Length = 724
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 115 PEEVTSTEPKESPVKKSPAKKVEAAESNG-KENGTDEAPEDSPAENGEPKKATMHLRTVM 291
P+ + + ++ VKK+ + E N +E PE++P+EN +R V
Sbjct: 276 PDILKLSSERQEKVKKNSKESPEIVRCNSTREAALQSLPEETPSENPSTIVLIRPMRVVK 335
Query: 292 PQ 297
P+
Sbjct: 336 PE 337
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 118 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE----APEDSPAENGE 255
+E S+E +E VK + + E E+ + +G+D+ A ++SP +GE
Sbjct: 8 DEAFSSEEEEERVKDNEEEDEEELEAVARSSGSDDDEVAAADESPVSDGE 57
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 112 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 237
A + TS E K+S KS + +GK+ EAPE++
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENN 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,045
Number of Sequences: 28952
Number of extensions: 276701
Number of successful extensions: 984
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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