Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30406.Seq
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 30 0.37
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 30 0.49
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 27 2.6
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 4.5
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.0
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 6.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 394 SEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSKGAI 540
SE+ ST A+TT++ R ++ A ++ P +SSKG I
Sbjct: 127 SESKSTSQSAVTTNSTRRKEKELEASKDGKIKPSSSNTRYPAISSKGPI 175
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 29.9 bits (64), Expect = 0.49
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 399 SALNVPKSNNYVNEQIRGYIR-NSHEPELSPIRATNGGAS-TRLQQGSYRVIPLTTSTGD 572
SA + P +N + I G++ SH S + + G S T +QQG PL+ S
Sbjct: 255 SAYDAPLLHNVDTQSIDGFVSVASHFSSASTAESLDDGHSATTIQQGDVSSYPLSRSV-- 312
Query: 573 STPAP 587
STP P
Sbjct: 313 STPVP 317
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNV 413
F C +CG + + ++H+TE + +Y I P L N I AL +
Sbjct: 397 FPCEICGNYVYMGRKAFDKHFTEQRHIY-GLKCLGISPSPLFNQITSIDEALQL 449
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 176 KQVLS*KFGRYILLTICVHVIITNYT*FTLMLITFGFLHLTLLRCYRGSPVVC 18
K+V S GR I++ + + I+ T TL L FG L L+ ++ V C
Sbjct: 72 KEVRSNVSGREIIIKMIITFILVQTTLITLDLYVFGATGLGLILSWKLFEVAC 124
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 923 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVG 982
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 983 FTTTIATPVGTTAGTVL 999
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 815 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTETVTSGSVG 874
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 875 FTTTIATPIGSTAGTVL 891
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 887 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 946
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 947 FTTTIATPIGTTAGTVL 963
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 959 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 1018
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 1019 FTTTIATPIGTTAGTVL 1035
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 295 ITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTS-TNRSEDTSGTAM 471
+T S+G T T + T +V TP W +E +++ TT+ T+GT +
Sbjct: 688 VTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVL 747
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T SIG T T + + +V TP W +E +++
Sbjct: 707 AGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVLVDVPTPSWVTETVTSGSVG 766
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 767 FTTTIATPIGSTAGTVL 783
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 779 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 838
Query: 424 ITTS 435
TT+
Sbjct: 839 FTTT 842
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 714 AGTVVVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVG 773
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 774 FTTTIATPVGTTAGTVL 790
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 291 TYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNYVNEQIRGYIRN 464
TYYN+ H+ +Y + + + P L N ++ +AL +N ++ RN
Sbjct: 453 TYYNDHHFHWGYHIYACAVIGLLDPSWLVNDNIRYVNALLRDSANPSESDTYFAMFRN 510
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 6.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = -3
Query: 532 PCWRRVDAPPLVARIGDSSGSWLFLMY 452
P W+ D + A + D++ W F ++
Sbjct: 117 PAWKHADYDGVAASVNDNNNDWKFFVF 143
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 370 TWTTPQWASEALSTCPKAITTSTNR---SEDTSGTAMSQNCLRSGRPTVERP 516
T T+ S + ST P +S N S SG A SQ RPT +RP
Sbjct: 31 TSTSAGHPSSSSSTLPNYAASSLNSRPVSSSGSGNAYSQAPYPPARPTSQRP 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,942
Number of Sequences: 5004
Number of extensions: 74437
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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