Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30406.Seq
(864 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 31 0.92
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 30 2.1
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 30 2.8
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 29 4.9
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 37.5 bits (83), Expect = 0.014
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
FKC CG L +KTY Q K YC +H PK + L+N + + +
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272
Query: 420 SNNYVNEQIRG-YIRNSHEPE-LSPIRATNGGASTRLQQGS 536
EQ RG Y S +PE L I ++ Q GS
Sbjct: 273 QYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGS 313
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 32.7 bits (71), Expect = 0.40
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 175 FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
F+ NE QVDR G +FTF ++P + N P R I GR+ K +A ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156
Query: 355 RSVRATWTTPQWASEALSTC 414
++ + Q +EA+ C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 31.5 bits (68), Expect = 0.92
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 468 HEPELSPIRATNGGASTRLQQGSYRVIPLTTSTGDSTPAPST 593
H PE+SPI+ T+ S ++ + V+P+ T+ D +P +T
Sbjct: 116 HPPEVSPIKTTHSEVSP-IETTPFHVLPIKTTHTDVSPIETT 156
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 31.5 bits (68), Expect = 0.92
Identities = 32/123 (26%), Positives = 47/123 (38%)
Frame = +1
Query: 388 WASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVR 567
WA ST P+ S N + T +G PR S+ G P +
Sbjct: 257 WAKVCRSTKPQGEKLSLNNTSATDDYEPVAEPAPNGNQPPTEPRTSTPGT-------PAK 309
Query: 568 EIRRQRPPHSTRLKQTESRKPTIGREKXL*TATLVRDEQTKLEMKHRARRRRFVPGILET 747
Q P R +T ++KP+ + + T LV + + KLEM H + ILE+
Sbjct: 310 STPTQSGPPLRRSTRTVNKKPS---SQPI-TIELVANGKPKLEMLHSCTPKENKDAILES 365
Query: 748 XGR 756
R
Sbjct: 366 FKR 368
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 6 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
QLL H +R Q+ Q++ +Q+ Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 298 TITSIGRKTKKYTA----LATYQRSVRATWTTPQWASEALS-TCPKAITTSTNRSEDTSG 462
T ++ TK Y+A +AT + AT T +++ S TCP T + S +
Sbjct: 356 TCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCYSVTCPTVATNTKGYSVMCAT 415
Query: 463 TAMSQNCLRSGRPTV 507
A + C R+ R TV
Sbjct: 416 VATNTKCYRAMRGTV 430
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 467 P*ARTVSDPGDQRWSVHASPARELSRDTPDYQYG 568
P A ++DP RW V AS +LS D P+++ G
Sbjct: 1162 PQANRIADPVSSRWGVDAS--LKLSADPPEFKPG 1193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,593,007
Number of Sequences: 59808
Number of extensions: 604492
Number of successful extensions: 1792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1785
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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